View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_81 (Length: 228)
Name: NF0063_2D_low_81
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_81
Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 13855158 - 13855055
Alignment:
Q
107
tggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacggcggagattgtggcggtggaagagaggagaat
206
Q
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13855158
tggcggtgggacggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacggcggagattgtggcggtggaagagaggagaat
13855059
T
Q
207
ggtg
210
Q
||||
T
13855058
ggtg
13855055
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 13855191 - 13855303
Alignment:
Q
1
gaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgaga
100
Q
||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
13855191
gaccctaatgttgacgctgtttacttgccgttaccgacgacgttacatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgtgttgcttgaga
13855290
T
Q
101
aaccggtggcggt
113
Q
|||||||||||||
T
13855291
aaccggtggcggt
13855303
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 13849368 - 13849267
Alignment:
Q
107
tggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacggcggagattgtggcggtggaagagaggagaat
206
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
T
13849368
tggcggtgggagggaagttgttgagttttgcgaaggtggttgctttggagagagtgcggctgccgacggcagagatggtggcggtggaagagaggagaat
13849269
T
Q
207
gg
208
Q
||
T
13849268
gg
13849267
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 13849401 - 13849510
Alignment:
Q
1
gaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggcggtggctgctgcaaagaaggggaagcatgtgttgcttgaga
100
Q
|||||||||||||||||||||||| |||| || | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||
T
13849401
gaccctaatgttgacgctgtttacgtgccgttgccgactacgttgcatgtgaaatgggcggtggctgctgcgaagaaggggaagcatgttttgttagaga
13849500
T
Q
101
aaccggtggc
110
Q
| ||||||||
T
13849501
agccggtggc
13849510
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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