View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0063_2D_low_86 (Length: 211)
Name: NF0063_2D_low_86
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0063_2D_low_86
[» ] chr4 (2 HSPs)
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 21228846 - 21228654
Alignment:
Q
19
aatagcgcaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa
118
Q
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
21228846
aatagcacaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccat
21228747
T
Q
119
ccatccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgatt
211
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
21228746
ccatccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgatt
21228654
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 10035758 - 10035699
Alignment:
Q
59
caaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa
118
Q
|||||||||||||||||||| |||||||| |||||||||||||| | || ||||||||
T
10035758
caaacttttacattacaccagcgaataataaattgtagaatgcaaaccgaaccaatccaa
10035699
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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