View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0063_2D_low_86 (Length: 211)
Name: NF0063_2D_low_86
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0063_2D_low_86 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 21228846 - 21228654
Alignment:
| Q |
19 |
aatagcgcaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21228846 |
aatagcacaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccat |
21228747 |
T |
|
| Q |
119 |
ccatccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21228746 |
ccatccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgatt |
21228654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 10035758 - 10035699
Alignment:
| Q |
59 |
caaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| | || |||||||| |
|
|
| T |
10035758 |
caaacttttacattacaccagcgaataataaattgtagaatgcaaaccgaaccaatccaa |
10035699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University