View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0063_2D_low_90 (Length: 205)

Name: NF0063_2D_low_90
Description: NF0063_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0063_2D_low_90
NF0063_2D_low_90
[»] chr7 (3 HSPs)
chr7 (13-188)||(32855684-32855859)
chr7 (85-169)||(32850285-32850369)
chr7 (13-53)||(32850420-32850460)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 32855859 - 32855684
Alignment:
Q  13 caacaggtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32855859 caacaggtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgatt 32855760  T
Q  113 gatgtgagcttttaaactttataatacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccac 188  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32855759 gatgtgagcttttaaactttataatacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccac 32855684  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 32850369 - 32850285
Alignment:
Q  85 gtagagcagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaattcaacacca 169  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32850369 gtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaattcaacacca 32850285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32850460 - 32850420
Alignment:
Q  13 caacaggtagcacttgatattttcagctggaaaggacctga 53  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  32850460 caacaggtagcagttggtattttcagctggaaaggacctga 32850420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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