View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0064_low_2 (Length: 686)

Name: NF0064_low_2
Description: NF0064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0064_low_2
NF0064_low_2
[»] chr7 (4 HSPs)
chr7 (117-603)||(46597205-46597691)
chr7 (471-610)||(41145514-41145653)
chr7 (471-610)||(43896240-43896379)
chr7 (471-610)||(12352918-12353057)
[»] chr5 (1 HSPs)
chr5 (471-610)||(23149029-23149168)
[»] chr4 (2 HSPs)
chr4 (471-610)||(32497306-32497445)
chr4 (435-536)||(29015977-29016078)
[»] chr8 (3 HSPs)
chr8 (361-603)||(9182920-9183162)
chr8 (361-603)||(11625111-11625353)
chr8 (95-160)||(9183363-9183428)
[»] chr6 (4 HSPs)
chr6 (361-603)||(10161143-10161385)
chr6 (69-148)||(16860599-16860678)
chr6 (498-541)||(21740958-21741001)
chr6 (309-417)||(16860839-16860947)
[»] chr3 (1 HSPs)
chr3 (498-541)||(51142343-51142386)


Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 117 - 603
Target Start/End: Original strand, 46597205 - 46597691
Alignment:
Q  117 ggaccggatggtctgaatcctgctttttaccaccgtttttggaaggaattaggtggagaaatattttatgttgcttcctcttggctcacttctagttcct 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  46597205 ggaccggatggtctgaattctgctttttaccaccgtttttggaaggaattaggtggagaaatattttttgttgcttcctcttggctcacttctggttcct 46597304  T
Q  217 ttccccctgagttgaatgccacacacatcgtgctcgctccaaaggatgattacccggaatatatgaaagaccttcgccctatctccctctttaatatcct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  46597305 ttccccctgagttgaatgccacacacatcgtgctcgctccaaagggtgataacccggaatatatgaaagaccttcgccctatctccctctgtaatgtcct 46597404  T
Q  317 atacaaaattatttctaaggtgctggctaaccgccttcgccctttgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatc 416  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46597405 atataaaattatttctaaggtgctggctaaccgccttcgccctttgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatc 46597504  T
Q  417 atggacaatgcactcacgactttcgaagttctacactacatgaaatgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaag 516  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46597505 atggacaatgcaatcacggctttcgaagttctacactgcatgaaatgcaagcgcaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaag 46597604  T
Q  517 cttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtttttctcctcaatggatctcttggatgatgatgt 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46597605 cttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtttttctcctcaatggatctcttggatgatgatgt 46597691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 610
Target Start/End: Original strand, 41145514 - 41145653
Alignment:
Q  471 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 570  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  41145514 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 41145613  T
Q  571 t-ttctcctcaatggatctcttggatgatgatgtccatctc 610  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  41145614 tctgctcc-caatggatcacatggatgatgatgtgcatctc 41145653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 610
Target Start/End: Original strand, 43896240 - 43896379
Alignment:
Q  471 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 570  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  43896240 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 43896339  T
Q  571 t-ttctcctcaatggatctcttggatgatgatgtccatctc 610  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  43896340 tctgctcc-caatggatcacatggatgatgatgtgcatctc 43896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 471 - 610
Target Start/End: Complemental strand, 12353057 - 12352918
Alignment:
Q  471 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 570  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  12353057 aaaggaaaagaaggagatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 12352958  T
Q  571 t-ttctcctcaatggatctcttggatgatgatgtccatctc 610  Q
    | | |||| ||||||| | | ||||||||||||| ||||||    
T  12352957 tctgctcc-caatggaacacatggatgatgatgtgcatctc 12352918  T

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Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 471 - 610
Target Start/End: Original strand, 23149029 - 23149168
Alignment:
Q  471 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 570  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || |||||||||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  23149029 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgatagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 23149128  T
Q  571 t-ttctcctcaatggatctcttggatgatgatgtccatctc 610  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  23149129 tctgctcc-caatggatcacatggatgatgatgtgcatctc 23149168  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 610
Target Start/End: Original strand, 32497306 - 32497445
Alignment:
Q  471 aaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgcaagttgggtt 570  Q
    |||||||||  ||| || |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||| || |||| ||| |||||||    
T  32497306 aaaggaaaagaaggggatatagctctgaaactcgatatttcaaaggcatttgacagtgtcagctggtcttatttacaagcaatcttatccaaattgggtt 32497405  T
Q  571 t-ttctcctcaatggatctcttggatgatgatgtccatctc 610  Q
    | | |||| ||||||||| | ||||||||||||| ||||||    
T  32497406 tctgctcc-caatggatcacatggatgatgatgtgcatctc 32497445  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 536
Target Start/End: Original strand, 29015977 - 29016078
Alignment:
Q  435 actttcgaagttctacactacatgaaatgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagtt 534  Q
    ||||| ||| ||||||| |  ||||||||||| || || || |||| ||||||  | ||||| ||||| |||||||||||||| |||||||| |||| ||    
T  29015977 acttttgaaattctacattttatgaaatgcaaacataagggtaaaaaaggtgaggtggctctaaaacttgatatttcaaaagcctttgatagcgtcaatt 29016076  T
Q  535 gg 536  Q
    ||    
T  29016077 gg 29016078  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 603
Target Start/End: Complemental strand, 9183162 - 9182920
Alignment:
Q  361 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 460  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| ||||||| || |||      
T  9183162 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcg 9183063  T
Q  461 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 560  Q
     |||||| | |||||||||  ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  9183062 ctgcaagaataaaggaaaacaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 9182963  T
Q  561 aagttgggtttttctcctcaatggatctcttggatgatgatgt 603  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  9182962 aaactgggattttgtcaccaatggatcacttggatgatgatgt 9182920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 603
Target Start/End: Original strand, 11625111 - 11625353
Alignment:
Q  361 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 460  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| | ||||| || |||      
T  11625111 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcg 11625210  T
Q  461 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 560  Q
     |||||| | |||||||||| ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  11625211 ctgcaagaataaaggaaaaaaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 11625310  T
Q  561 aagttgggtttttctcctcaatggatctcttggatgatgatgt 603  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  11625311 aaactgggattttgtcaccaatggatcacttggatgatgatgt 11625353  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 9183428 - 9183363
Alignment:
Q  95 tatgcatcctgataaatcccccggaccggatggtctgaatcctgctttttaccaccgtttttggaa 160  Q
    ||||||||| |||||||| || ||||| || ||||| ||||||||||||| |||||| || |||||    
T  9183428 tatgcatccagataaatcacctggacctgacggtcttaatcctgcttttttccaccgattctggaa 9183363  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 603
Target Start/End: Complemental strand, 10161385 - 10161143
Alignment:
Q  361 tgattgataaatggatatctacagaacaagctgcctttgttccttctcgttctatcatggacaatgcactcacgactttcgaagttctacactacatgaa 460  Q
    ||||| |||||||||| |||  ||| ||||| || ||||| ||||||||||| || ||||| || || |||||  | || ||| ||||||| || |||      
T  10161385 tgattaataaatggatttctctagagcaagcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcg 10161286  T
Q  461 atgcaagcacaaaggaaaaacaggtgacatagctctcaaactcgatatttcaaaagcttttgatagtgtcagttggtcctatttgcaagccatattatgc 560  Q
     |||||| | |||||||||  ||||||  ||||||| ||||| || ||||| || |||||||||||||| || ||||| |||||  |||| || || ||     
T  10161285 ctgcaagaataaaggaaaacaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgttagctggtcatatttaaaagctattttgtgt 10161186  T
Q  561 aagttgggtttttctcctcaatggatctcttggatgatgatgt 603  Q
    ||  |||| |||| ||  ||||||||| |||||||||||||||    
T  10161185 aaactgggattttgtcaccaatggatcacttggatgatgatgt 10161143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 16860599 - 16860678
Alignment:
Q  69 caagaatttcatgaagcaatatttaatatgcatcctgataaatcccccggaccggatggtctgaatcctgctttttacca 148  Q
    ||||||||| | || ||||| |||| ||||||||| |||||||| || || ||||||||||| ||||| || ||||||||    
T  16860599 caagaatttaaagaggcaatttttagtatgcatccggataaatctccgggtccggatggtctaaatccagcattttacca 16860678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 541
Target Start/End: Complemental strand, 21741001 - 21740958
Alignment:
Q  498 aaactcgatatttcaaaagcttttgatagtgtcagttggtccta 541  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||    
T  21741001 aaacttgatatattaaaagcttttgatagtgtcagttggtccta 21740958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 309 - 417
Target Start/End: Original strand, 16860839 - 16860947
Alignment:
Q  309 aatatcctatacaaaattatttctaaggtgctggctaaccgccttcgccctttgattgataaatggatatctacagaacaagctgcctttgttccttctc 408  Q
    |||||| ||||||||||||| || ||||| || || ||||| ||||| || ||||||  |||||||||||||  |||||| || || ||| |||  ||||    
T  16860839 aatatcttatacaaaattatctcgaaggtccttgccaaccgtcttcgtccgttgattagtaaatggatatctttagaacaggcggcttttattcactctc 16860938  T
Q  409 gttctatca 417  Q
    |||| ||||    
T  16860939 gttccatca 16860947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 498 - 541
Target Start/End: Complemental strand, 51142386 - 51142343
Alignment:
Q  498 aaactcgatatttcaaaagcttttgatagtgtcagttggtccta 541  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  51142386 aaacttgatatatcaaaagcttttgatagtgtcagttggtccta 51142343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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