View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0064_low_3 (Length: 560)

Name: NF0064_low_3
Description: NF0064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0064_low_3
NF0064_low_3
[»] scaffold0026 (1 HSPs)
scaffold0026 (19-474)||(12437-12872)
[»] chr2 (22 HSPs)
chr2 (19-471)||(26582856-26583313)
chr2 (327-474)||(5706610-5706758)
chr2 (244-477)||(23062983-23063216)
chr2 (281-477)||(23878286-23878481)
chr2 (301-415)||(23089608-23089722)
chr2 (19-337)||(23168973-23169294)
chr2 (19-337)||(23580230-23580551)
chr2 (311-415)||(21907744-21907848)
chr2 (301-415)||(23102036-23102150)
chr2 (285-424)||(29281336-29281475)
chr2 (347-455)||(9978-10086)
chr2 (244-400)||(24660876-24661032)
chr2 (344-455)||(25181446-25181557)
chr2 (242-439)||(26884503-26884701)
chr2 (254-357)||(23264421-23264524)
chr2 (23-81)||(20914263-20914321)
chr2 (421-477)||(23264557-23264613)
chr2 (303-393)||(27208318-27208408)
chr2 (303-393)||(27210653-27210743)
chr2 (19-47)||(200822-200850)
chr2 (19-47)||(6744292-6744320)
chr2 (19-47)||(27367551-27367579)
[»] scaffold0634 (2 HSPs)
scaffold0634 (19-408)||(2747-3136)
scaffold0634 (403-439)||(3181-3217)
[»] chr6 (29 HSPs)
chr6 (19-471)||(29614738-29615195)
chr6 (279-474)||(12167637-12167832)
chr6 (279-474)||(19286546-19286741)
chr6 (279-472)||(19877730-19877923)
chr6 (279-474)||(19883506-19883701)
chr6 (327-474)||(34640575-34640723)
chr6 (327-474)||(34647249-34647397)
chr6 (279-474)||(19786455-19786650)
chr6 (314-474)||(25470290-25470451)
chr6 (344-472)||(21365067-21365195)
chr6 (344-472)||(23969049-23969177)
chr6 (249-415)||(18799754-18799920)
chr6 (100-415)||(25396340-25396654)
chr6 (281-415)||(21565765-21565899)
chr6 (20-135)||(12167420-12167535)
chr6 (20-135)||(19877513-19877628)
chr6 (20-135)||(19883289-19883404)
chr6 (254-444)||(19471891-19472080)
chr6 (344-455)||(20008493-20008604)
chr6 (20-135)||(19286329-19286444)
chr6 (20-135)||(19786751-19786866)
chr6 (281-357)||(9186827-9186903)
chr6 (242-420)||(19300317-19300495)
chr6 (260-357)||(24513456-24513553)
chr6 (23-56)||(19439888-19439921)
chr6 (421-474)||(24513370-24513423)
chr6 (25-81)||(23105384-23105440)
chr6 (364-408)||(24513425-24513469)
chr6 (19-47)||(24562463-24562491)
[»] chr3 (27 HSPs)
chr3 (23-477)||(18914193-18914646)
chr3 (20-471)||(41455687-41456142)
chr3 (325-471)||(24192272-24192418)
chr3 (281-415)||(16802041-16802175)
chr3 (240-413)||(13324376-13324549)
chr3 (311-415)||(55499700-55499804)
chr3 (240-357)||(13302844-13302961)
chr3 (285-438)||(14865184-14865338)
chr3 (361-477)||(17241085-17241201)
chr3 (240-357)||(13313520-13313637)
chr3 (84-144)||(18136117-18136177)
chr3 (404-473)||(10390034-10390104)
chr3 (404-473)||(10415123-10415193)
chr3 (404-473)||(10421793-10421863)
chr3 (23-81)||(13036915-13036973)
chr3 (281-365)||(17243260-17243343)
chr3 (23-75)||(18136253-18136306)
chr3 (84-140)||(18129607-18129663)
chr3 (23-81)||(18129733-18129792)
chr3 (23-56)||(31690553-31690586)
chr3 (23-56)||(31943629-31943662)
chr3 (19-47)||(13968801-13968829)
chr3 (19-47)||(13974276-13974304)
chr3 (19-47)||(14084712-14084740)
chr3 (19-47)||(14090113-14090141)
chr3 (19-47)||(24123171-24123199)
chr3 (19-47)||(49399654-49399682)
[»] scaffold0025 (1 HSPs)
scaffold0025 (325-471)||(14977-15123)
[»] chr7 (32 HSPs)
chr7 (240-471)||(13742945-13743174)
chr7 (279-474)||(13006706-13006901)
chr7 (278-471)||(13123506-13123698)
chr7 (328-474)||(12591230-12591377)
chr7 (254-477)||(13678772-13678995)
chr7 (281-477)||(16676660-16676845)
chr7 (281-477)||(17650896-17651081)
chr7 (278-471)||(12710435-12710627)
chr7 (344-472)||(3857953-3858082)
chr7 (311-415)||(11389922-11390026)
chr7 (311-455)||(20311597-20311740)
chr7 (260-449)||(46625275-46625464)
chr7 (344-455)||(2464763-2464874)
chr7 (311-409)||(11383440-11383538)
chr7 (19-135)||(13742686-13742803)
chr7 (285-455)||(16090425-16090595)
chr7 (19-135)||(13123851-13123967)
chr7 (20-135)||(13006489-13006604)
chr7 (283-455)||(29181654-29181826)
chr7 (19-135)||(12710780-12710896)
chr7 (316-439)||(14320192-14320316)
chr7 (311-415)||(21231571-21231674)
chr7 (23-81)||(12694777-12694835)
chr7 (23-81)||(15142390-15142448)
chr7 (23-56)||(1612809-1612842)
chr7 (23-75)||(14945802-14945856)
chr7 (23-75)||(15373395-15373449)
chr7 (23-81)||(16073896-16073954)
chr7 (23-77)||(16476067-16476121)
chr7 (19-47)||(4280144-4280172)
chr7 (404-451)||(13678982-13679030)
chr7 (19-47)||(19616476-19616504)
[»] chr5 (28 HSPs)
chr5 (279-474)||(23527904-23528099)
chr5 (311-451)||(18408491-18408631)
chr5 (344-472)||(28889925-28890053)
chr5 (344-472)||(28896629-28896757)
chr5 (344-472)||(28909877-28910005)
chr5 (344-472)||(28931569-28931697)
chr5 (344-472)||(28946272-28946400)
chr5 (344-455)||(19236299-19236410)
chr5 (346-455)||(22467181-22467290)
chr5 (20-135)||(23527632-23527747)
chr5 (344-455)||(22460555-22460666)
chr5 (84-144)||(22232436-22232496)
chr5 (344-472)||(28933070-28933200)
chr5 (404-474)||(20819618-20819689)
chr5 (404-474)||(20826718-20826789)
chr5 (303-439)||(34829441-34829578)
chr5 (23-77)||(10035305-10035359)
chr5 (23-77)||(21901795-21901849)
chr5 (23-76)||(18819096-18819149)
chr5 (367-415)||(22439322-22439370)
chr5 (23-77)||(21869484-21869538)
chr5 (23-77)||(21873764-21873818)
chr5 (23-72)||(22232575-22232625)
chr5 (311-357)||(22439360-22439406)
chr5 (23-81)||(25013745-25013803)
chr5 (19-47)||(1857471-1857499)
chr5 (23-55)||(21624719-21624751)
chr5 (19-47)||(21675439-21675467)
[»] chr1 (16 HSPs)
chr1 (279-472)||(41111214-41111407)
chr1 (313-414)||(18712117-18712218)
chr1 (344-455)||(20858305-20858416)
chr1 (344-455)||(21705674-21705785)
chr1 (344-455)||(21710217-21710328)
chr1 (20-135)||(41110997-41111112)
chr1 (344-455)||(20851678-20851789)
chr1 (84-144)||(20941657-20941717)
chr1 (244-449)||(22030298-22030504)
chr1 (244-357)||(11157441-11157554)
chr1 (303-440)||(19961547-19961684)
chr1 (23-75)||(20941793-20941846)
chr1 (23-81)||(21698285-21698344)
chr1 (23-81)||(23631145-23631203)
chr1 (19-47)||(21542237-21542265)
chr1 (19-47)||(42095871-42095899)
[»] scaffold1773 (2 HSPs)
scaffold1773 (278-471)||(452-644)
scaffold1773 (19-135)||(153-269)
[»] chr4 (19 HSPs)
chr4 (278-474)||(8046420-8046616)
chr4 (327-474)||(53483023-53483171)
chr4 (303-455)||(11847462-11847614)
chr4 (311-477)||(15407454-15407608)
chr4 (285-455)||(16147376-16147546)
chr4 (324-415)||(14486049-14486140)
chr4 (303-449)||(13887144-13887289)
chr4 (303-449)||(13888001-13888146)
chr4 (317-449)||(15244587-15244719)
chr4 (322-445)||(15307497-15307620)
chr4 (84-144)||(14555881-14555941)
chr4 (19-135)||(8046777-8046893)
chr4 (23-80)||(30237938-30237995)
chr4 (244-444)||(8834185-8834385)
chr4 (240-293)||(14485988-14486041)
chr4 (23-77)||(14821545-14821599)
chr4 (149-202)||(8046692-8046745)
chr4 (23-75)||(14556017-14556070)
chr4 (23-56)||(26077669-26077702)
[»] scaffold0247 (1 HSPs)
scaffold0247 (301-474)||(10667-10829)
[»] chr8 (17 HSPs)
chr8 (278-471)||(23865885-23866078)
chr8 (364-474)||(17053949-17054060)
chr8 (311-477)||(14057148-14057302)
chr8 (311-477)||(25111354-25111508)
chr8 (344-455)||(24321216-24321327)
chr8 (254-415)||(18613531-18613691)
chr8 (19-135)||(19902808-19902924)
chr8 (19-135)||(23865615-23865732)
chr8 (84-144)||(19987990-19988050)
chr8 (20-97)||(17053780-17053858)
chr8 (23-75)||(21282245-21282298)
chr8 (23-81)||(20005554-20005612)
chr8 (23-77)||(22743893-22743947)
chr8 (23-56)||(21669043-21669076)
chr8 (24-75)||(19988126-19988178)
chr8 (19-47)||(23825305-23825333)
chr8 (19-47)||(30766917-30766945)
[»] scaffold0317 (2 HSPs)
scaffold0317 (254-477)||(665-888)
scaffold0317 (404-451)||(875-923)
[»] scaffold0456 (2 HSPs)
scaffold0456 (192-474)||(243-504)
scaffold0456 (192-474)||(7388-7649)
[»] scaffold0222 (1 HSPs)
scaffold0222 (260-477)||(16086-16303)
[»] scaffold0117 (2 HSPs)
scaffold0117 (279-471)||(9167-9358)
scaffold0117 (19-135)||(9512-9628)
[»] scaffold0154 (1 HSPs)
scaffold0154 (240-415)||(30195-30370)
[»] scaffold0249 (2 HSPs)
scaffold0249 (84-197)||(7557-7670)
scaffold0249 (23-91)||(7730-7798)
[»] scaffold0461 (2 HSPs)
scaffold0461 (281-477)||(581-766)
scaffold0461 (281-378)||(7605-7702)
[»] scaffold0476 (1 HSPs)
scaffold0476 (281-438)||(3854-4011)
[»] scaffold0232 (1 HSPs)
scaffold0232 (244-449)||(18961-19166)
[»] scaffold0138 (1 HSPs)
scaffold0138 (244-449)||(1117-1322)
[»] scaffold0053 (2 HSPs)
scaffold0053 (131-450)||(81764-82082)
scaffold0053 (285-455)||(80036-80206)
[»] scaffold0029 (3 HSPs)
scaffold0029 (19-471)||(110939-111378)
scaffold0029 (344-455)||(91747-91858)
scaffold0029 (344-455)||(97473-97584)
[»] scaffold0124 (1 HSPs)
scaffold0124 (312-477)||(34861-35015)
[»] scaffold0310 (1 HSPs)
scaffold0310 (311-412)||(6876-6976)
[»] scaffold0924 (1 HSPs)
scaffold0924 (372-471)||(1343-1442)
[»] scaffold0077 (3 HSPs)
scaffold0077 (281-415)||(4195-4329)
scaffold0077 (86-139)||(17972-18025)
scaffold0077 (86-139)||(23605-23658)
[»] scaffold0028 (4 HSPs)
scaffold0028 (254-415)||(65414-65575)
scaffold0028 (322-449)||(1445-1572)
scaffold0028 (19-49)||(52350-52380)
scaffold0028 (19-47)||(46947-46975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (275-439)||(17497-17661)
[»] scaffold0235 (2 HSPs)
scaffold0235 (311-464)||(23192-23334)
scaffold0235 (281-464)||(15475-15647)
[»] scaffold0004 (2 HSPs)
scaffold0004 (262-477)||(116183-116388)
scaffold0004 (281-415)||(129221-129355)
[»] scaffold0094 (1 HSPs)
scaffold0094 (254-449)||(51554-51749)
[»] scaffold0085 (1 HSPs)
scaffold0085 (327-455)||(4217-4345)
[»] scaffold0031 (2 HSPs)
scaffold0031 (244-449)||(121200-121406)
scaffold0031 (244-449)||(132077-132283)
[»] scaffold0139 (1 HSPs)
scaffold0139 (254-478)||(15521-15733)
[»] scaffold0020 (1 HSPs)
scaffold0020 (262-415)||(102503-102656)
[»] scaffold0023 (1 HSPs)
scaffold0023 (362-455)||(134867-134960)
[»] scaffold1061 (1 HSPs)
scaffold1061 (260-361)||(1716-1817)
[»] scaffold0107 (1 HSPs)
scaffold0107 (311-408)||(41171-41267)
[»] scaffold0348 (3 HSPs)
scaffold0348 (84-144)||(1527-1587)
scaffold0348 (23-75)||(1663-1716)
scaffold0348 (23-56)||(3107-3140)
[»] scaffold0001 (3 HSPs)
scaffold0001 (19-135)||(174440-174557)
scaffold0001 (242-439)||(493588-493786)
scaffold0001 (325-387)||(525142-525204)
[»] scaffold0483 (1 HSPs)
scaffold0483 (309-440)||(11569-11700)
[»] scaffold0006 (1 HSPs)
scaffold0006 (421-471)||(49595-49645)
[»] scaffold0011 (2 HSPs)
scaffold0011 (23-75)||(152546-152599)
scaffold0011 (19-47)||(174529-174557)
[»] scaffold0108 (1 HSPs)
scaffold0108 (23-79)||(45691-45747)
[»] scaffold0535 (1 HSPs)
scaffold0535 (25-75)||(5969-6020)
[»] scaffold0244 (1 HSPs)
scaffold0244 (23-81)||(13789-13847)
[»] scaffold0049 (1 HSPs)
scaffold0049 (23-77)||(42870-42924)
[»] scaffold1853 (1 HSPs)
scaffold1853 (23-75)||(741-793)
[»] scaffold0261 (2 HSPs)
scaffold0261 (303-378)||(24192-24267)
scaffold0261 (403-439)||(24070-24106)
[»] scaffold0180 (1 HSPs)
scaffold0180 (23-77)||(12616-12670)
[»] scaffold0167 (1 HSPs)
scaffold0167 (23-81)||(20024-20082)
[»] scaffold0005 (1 HSPs)
scaffold0005 (23-77)||(18110-18164)
[»] scaffold0266 (1 HSPs)
scaffold0266 (23-56)||(23183-23216)
[»] scaffold0106 (1 HSPs)
scaffold0106 (19-47)||(38582-38610)
[»] scaffold0076 (2 HSPs)
scaffold0076 (19-47)||(30113-30141)
scaffold0076 (19-47)||(35514-35542)


Alignment Details
Target: scaffold0026 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 12872 - 12437
Alignment:
Q  19 aacctgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaacccc-acacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||||||| | |||||| | ||||||||||||| || || | | ||| ||||||||||||||| | |||||||||||||    
T  12872 aacctgtgtatatctacatacaactcaactacacatatatctcatatgacttactactccgagagttctaacaatccagaacatacacaattaattataa 12773  T
Q  118 ttatgcacatacatcaatttcattcaat-gtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcat 216  Q
    |||||| ||||||||||||||||||||| ||  |||| | |||||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||     
T  12772 ttatgcgcatacatcaatttcattcaatagt--tatacattcacttgatttcttactcaatcatctccaaaattcactaacatcaacc-aattcgatcac 12676  T
Q  217 cagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagc-aa 314  Q
    | |   ||| ||||||| ||||| |||||||||||||  |||| ||||| || || |||||||||||||||||| | ||||||||  ||||| |||| ||    
T  12675 cggcttgttctagtaggattctgatacctatacaagggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctc-gtgcacgaagcaaa 12577  T
Q  315 agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggt 414  Q
    ||||||||||| ||||||||||||  ||||||||||||                    ||||||||||||||||| || |||||||||||||||||||||    
T  12576 agttcagaaagaggctgactaaggctcacttcgcttaa--------------------gcgaccggcttacagtaggtctgggttcagctcgcttacggt 12497  T
Q  415 ttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12496 tcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 26582856 - 26583313
Alignment:
Q  19 aacctgtgtatatctacatacaactcaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||| ||| || |||||||||| ||||||||||| || || ||  || ||||||||||||||| | |||||| ||||||    
T  26582856 aacctgtgtatatctacatacaacttaactattacatatgttttatatgacttactactccgcaactcaaacaatccagaacatacacaattatttataa 26582955  T
Q  118 ttatgcacatacatcaatttcattcaa--tgtaat--atataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgat 213  Q
    |||||| |||||||||||  ||||| |  ||| ||  ||||| ||||| ||||||||||||| |||||||||| ||||||||||| ||| ||| ||||||    
T  26582956 ttatgcgcatacatcaatcacattccacatgttatgtatatattcactcgatttcatactcaatcatctccaacatttactaacaccaatcaa-ttcgat 26583054  T
Q  214 catcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagc 312  Q
    || | |   ||| || ||||  || | |||||| || ||| |||||  |||| ||||| ||||| |||||||||||| | ||||||||  ||||| || |    
T  26583055 caccggctagttctaataggagtcggttacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcc-tgcacgaaac 26583153  T
Q  313 aaa-gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttac 411  Q
    ||| ||||||||   |||||||||||    ||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||    
T  26583154 aaaagttcagaagaaggctgactaagacttacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttac 26583253  T
Q  412 ggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26583254 gggtcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 26583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 327 - 474
Target Start/End: Complemental strand, 5706758 - 5706610
Alignment:
Q  327 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggt 425  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | |||||||||    
T  5706758 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 5706659  T
Q  426 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  5706658 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 5706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 244 - 477
Target Start/End: Original strand, 23062983 - 23063216
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    |||| |||| ||||| ||||||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| ||||||||||||||||||| |    
T  23062983 tatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcaa 23063081  T
Q  343 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttc 442  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||  |||| |||||   |||||| |||  | |||  |||||||||| ||||||||||    
T  23063082 cttcgcttaagcgacggctggttcgcttaagcgaccggcttacagagagttggggtttcactcgctaacgcctcgcttgcggttcgcttaagcgaacttc 23063181  T
Q  443 tgacagaatcaaaatggtttttcgctcacaggttc 477  Q
    |||||||||  ||||| ||||||||| || |||||    
T  23063182 tgacagaatgcaaatgatttttcgcttacgggttc 23063216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 281 - 477
Target Start/End: Original strand, 23878286 - 23878481
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||||| |||||| | ||||| | |||| ||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  23878286 aatgctcaaaaggatcccct-agtgcacgaggcaaggttca-aaagtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgaccg 23878383  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
    ||||||||||||| ||||||| |||||||||||||| |||  | ||||||||||||||| |  || ||||||||||| ||||  ||||||||||||||    
T  23878384 gcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggcagaatcaaaaaggttcctcgctcacaggttc 23878481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 23089722 - 23089608
Alignment:
Q  301 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc 400  Q
    ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||    
T  23089722 aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttc 23089623  T
Q  401 agctcgcttacggtt 415  Q
     ||||||||||||||    
T  23089622 tgctcgcttacggtt 23089608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 23169294 - 23168973
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    |||| ||||||||| ||||||||||| || | ||||||| |||||||| |||||| || || ||  || |||||||||| |||| | |||| | ||||||    
T  23169294 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaactcaaacaatccagcacatacacaatcatttataa 23169195  T
Q  118 ttatgcacatacatcaatttcattcaa--tgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatca 215  Q
    |||||| ||||||||| |  ||||| |  ||| ||||| | |||| ||||||||||||||  ||||||||||||| | ||||||||||||| | ||||||    
T  23169194 ttatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaa-tgcgatca 23169096  T
Q  216 tcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagca 313  Q
     ||||| ||| ||||||| | ||  ||||||||||||| ||||| ||||||||||| | |||||||||| | ||||||| |||||| | | ||| || ||    
T  23169095 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccct-agtacacgaaaca 23168997  T
Q  314 aagttcagaaagtggctgactaag 337  Q
    |  ||||||||| |||||||||||    
T  23168996 attttcagaaagaggctgactaag 23168973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 23580551 - 23580230
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    |||| ||||||||| ||||||||||| || | ||||||| |||||||| |||||| || || ||  || |||||||||| |||| | |||| | ||||||    
T  23580551 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaactcaaacaatccagcacatacacaatcatttataa 23580452  T
Q  118 ttatgcacatacatcaatttcattcaa--tgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatca 215  Q
    |||||| ||||||||| |  ||||| |  ||| ||||| | |||| ||||||||||||||  ||||||||||||| | ||||||||||||| | ||||||    
T  23580451 ttatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaa-tgcgatca 23580353  T
Q  216 tcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagca 313  Q
     ||||| ||| ||||||| | ||  ||||||||||||| ||||| ||||||||||| | |||||||||| | ||||||| |||||| | | ||| || ||    
T  23580352 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccct-agtacacgaaaca 23580254  T
Q  314 aagttcagaaagtggctgactaag 337  Q
    |  ||||||||| |||||||||||    
T  23580253 attttcagaaagaggctgactaag 23580230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 311 - 415
Target Start/End: Original strand, 21907744 - 21907848
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||||||| |    
T  21907744 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttggggttccgctcgctaa 21907843  T
Q  411 cggtt 415  Q
    |||||    
T  21907844 cggtt 21907848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 23102150 - 23102036
Alignment:
Q  301 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc 400  Q
    ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||| || || ||||||||||||||| |||||||    
T  23102150 aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagtgatcggcttacagtaagtctgggttc 23102051  T
Q  401 agctcgcttacggtt 415  Q
     ||||||||||||||    
T  23102050 tgctcgcttacggtt 23102036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 424
Target Start/End: Original strand, 29281336 - 29281475
Alignment:
Q  285 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggctta 384  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || ||||||||||||||||||||||||||| ||||||| |||||    
T  29281336 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagctta 29281435  T
Q  385 cagtaagtttgggttcagctcgcttacggtttgctcacgg 424  Q
    ||||| || ||||||||| |||||||||| | ||||||||    
T  29281436 cagtaggtctgggttcagttcgcttacgggtcgctcacgg 29281475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 347 - 455
Target Start/End: Original strand, 9978 - 10086
Alignment:
Q  347 gcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgac 446  Q
    |||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  || |    
T  9978 gcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggc 10077  T
Q  447 agaatcaaa 455  Q
    |||||||||    
T  10078 agaatcaaa 10086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 244 - 400
Target Start/End: Original strand, 24660876 - 24661032
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||| ||| |||| ||||||||||||||||  |      
T  24660876 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagtaaaattcaaaaagtggctgactaagacctt 24660974  T
Q  343 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc 400  Q
    ||| ||||||||||||||| | |||||| ||||||||||| |||| ||||| ||||||    
T  24660975 ctttgcttaagcgacggctggctcgcttaagcgaccggctcacagaaagttggggttc 24661032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 25181557 - 25181446
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||| || ||||||||| || ||||||| | |||||||| |||||| |||||| |  |    
T  25181557 ttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggtctgggttcagttcacttacgggtcgctcacggctcgcttaagcgaattctt 25181458  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  25181457 ggcagaatcaaa 25181446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 242 - 439
Target Start/End: Original strand, 26884503 - 26884701
Alignment:
Q  242 cctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtc 340  Q
    ||||||||||  ||||| ||| | ||||| | |||| | ||| ||||||||| |||||| | ||||| |||||| |||||||||| ||||||||||||      
T  26884503 cctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccct-agtgcacgaagcaaggttcagaaagaggctgactaaggct 26884601  T
Q  341 cacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgcttacggtttgctcacggttcgcttgagcgaac 439  Q
    || ||||||||||||| || ||| |||||| ||||||| ||  |||  | |||  |||||  ||||||| |||||| |||||| ||||||||||||||||    
T  26884602 cagttcgcttaagcgaagggtagctcgcttaagcgaccagcacacaaaaggttgaggttctcgctcgctcacggttagctcacagttcgcttgagcgaac 26884701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 23264421 - 23264524
Alignment:
Q  254 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 352  Q
    ||||| ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  23264421 ttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 23264519  T
Q  353 gcgac 357  Q
    |||||    
T  23264520 gcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 20914321 - 20914263
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||    
T  20914321 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 20914263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 477
Target Start/End: Original strand, 23264557 - 23264613
Alignment:
Q  421 acggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||||| || |||||    
T  23264557 acggttcgcttgagcgaacttctgacataatgaaaatgatttttcgcttacgggttc 23264613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 27208408 - 27208318
Alignment:
Q  303 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt 393  Q
    ||||| || ||| |||||||||  ||||||||||||  || ||||||||||||| || ||| |||||| ||||||| ||| |||| |||||    
T  27208408 tgcacgaaacaaggttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaaagtt 27208318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 27210743 - 27210653
Alignment:
Q  303 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt 393  Q
    ||||| || ||| |||||||||  ||||||||||||  || ||||||||||||| || ||| |||||| ||||||| ||| |||| |||||    
T  27210743 tgcacgaaacaaggttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaaagtt 27210653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 200822 - 200850
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  200822 aacctgtgtatatctacatacaactcaac 200850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 6744320 - 6744292
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  6744320 aacctgtgtatatctacatacaactcaac 6744292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 27367579 - 27367551
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  27367579 aacctgtgtatatctacatacaactcaac 27367551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 2747 - 3136
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || || ||  || |||||||||||||||   |||||| ||||||    
T  2747 aacctgtgtatatctacatacaactcaactaatacatatgtttcatatgacttactactccgcaactcaaacaatccagaacatagacaattatttataa 2846  T
Q  118 ttatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcatc 217  Q
    |||||| |||||||||| ||||||||||  | |||||| |||| |||||||| ||||| |||||||||| ||| ||||||||||||| |||||||||| |    
T  2847 ttatgcgcatacatcaaattcattcaat-aattatatattcacatgatttcaaactcaatcatctccaatattcactaacatcaacc-aattcgatcacc 2944  T
Q  218 agagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagc-aaa 315  Q
     |   ||| |||| || ||||| ||||||||||||| ||||| ||||| || || |||||||||||||||||| | ||||||||  ||||| |||| |||    
T  2945 ggcttgttctagtgggattctggtacctatacaagggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctc-gtgcacgaagcaaaa 3043  T
Q  316 gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgct 408  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||  |||||||    
T  3044 gttcagaaagaggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggtttcgctcgct 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 3181 - 3217
Alignment:
Q  403 ctcgcttacggtttgctcacggttcgcttgagcgaac 439  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  3181 ctcgcttacggttcgctcacggttcgcttaagcgaac 3217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 5e-85; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 29615195 - 29614738
Alignment:
Q  19 aacctgtgtatatctacatacaactcaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||||||||  | || ||  || ||||||||||||||| | |||||| ||||||    
T  29615195 aacctgtgtatatctacatacaactcgactattacatatgtttcatatgacttactgctccgcaactc-aacaatccagaacatacacaattatttataa 29615097  T
Q  118 ttatgcacatacatcaatttcattcaa--tgtaatatataa------tcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaatt 209  Q
    |||| |||||||||||||  ||||| |  ||| |||||||       ||||||| ||||||||||| |||||||||| ||||||||||| ||| ||| ||    
T  29615096 ttattcacatacatcaatcacattccacatgttatatatacacatattcacttgttttcatactcaatcatctccaacatttactaacaccaatcaa-tt 29614998  T
Q  210 cgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcaca 308  Q
    | |||| | |  |||| || || | ||||| ||||||| | ||| |||||  |||| || || ||||| |||||||||||| | || |||||| |||||     
T  29614997 caatcaccggctcgttctaataagattctgttacctatgccagggttatactagttaaaggaaatattatagaatgctcaagaagttccctca-tgcacg 29614899  T
Q  309 aagcaaa-gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgc 407  Q
    || |||| ||||||||   ||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||    
T  29614898 aaacaaaagttcagaa---ggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccgacttacagtaggtctgggttcagctcgc 29614802  T
Q  408 ttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614801 ttacgggttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 29614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 279 - 474
Target Start/End: Original strand, 12167637 - 12167832
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  12167637 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 12167734  T
Q  378 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  12167735 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 12167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 279 - 474
Target Start/End: Original strand, 19286546 - 19286741
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  19286546 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 19286643  T
Q  378 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  19286644 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19286741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 279 - 472
Target Start/End: Original strand, 19877730 - 19877923
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  19877730 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 19877827  T
Q  378 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcaca 472  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  19877828 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 19877923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 279 - 474
Target Start/End: Original strand, 19883506 - 19883701
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||| | |||||| |||||||||||||||||||||||||||||| ||||||    
T  19883506 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctaattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 19883603  T
Q  378 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  19883604 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 327 - 474
Target Start/End: Complemental strand, 34640723 - 34640575
Alignment:
Q  327 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggt 425  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | |||||||||    
T  34640723 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 34640624  T
Q  426 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  34640623 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 327 - 474
Target Start/End: Complemental strand, 34647397 - 34647249
Alignment:
Q  327 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggt 425  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | |||||||||    
T  34647397 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 34647298  T
Q  426 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  34647297 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 279 - 474
Target Start/End: Complemental strand, 19786650 - 19786455
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    |||| |||||| | ||||||||| ||||  |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  19786650 agaacgctcaagaagtcccctca-tgcattaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 19786553  T
Q  378 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    | |||||||||| ||| ||||||||  |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  19786552 cagcttacagtaggttctgggttcacttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 314 - 474
Target Start/End: Complemental strand, 25470451 - 25470290
Alignment:
Q  314 aagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacg 412  Q
    |||||||||||  ||||||||||||| |||||||||||||||||| ||||||||||| |||||||  ||||||||| ||| |||| |||| |||||||||    
T  25470451 aagttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggttctgggctcagttcgcttacg 25470352  T
Q  413 gtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    | | |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  25470351 ggtcgctcacggttcgcttgagcgaattttggacagaatcaaaatggtttttcgctcacagg 25470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 21365195 - 21365067
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||      
T  21365195 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttg 21365096  T
Q  444 gacagaatcaaaatggtttttcgctcaca 472  Q
    |||||||||||||||||||||||||||||    
T  21365095 gacagaatcaaaatggtttttcgctcaca 21365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 23969177 - 23969049
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||      
T  23969177 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttg 23969078  T
Q  444 gacagaatcaaaatggtttttcgctcaca 472  Q
    |||||||||||||||||||||||||||||    
T  23969077 gacagaatcaaaatggtttttcgctcaca 23969049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 249 - 415
Target Start/End: Original strand, 18799754 - 18799920
Alignment:
Q  249 aaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcg 347  Q
    |||| ||||| ||||||||||  | || || ||||||| |||||| |||||| ||||||  | |||||||||| ||||||||||||||||||  ||||||    
T  18799754 aagggttatacaagttgaaaggaacatgtttgaatgctaaaaagggtcccct-aatgcatgaggcaaagttcaaaaagtggctgactaaggttgacttcg 18799852  T
Q  348 cttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  18799853 cttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttacggtt 18799920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 100 - 415
Target Start/End: Original strand, 25396340 - 25396654
Alignment:
Q  100 atgcccaattaattataattatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacat 199  Q
    |||| |||||||| ||||| || |  || |||||| |||||||||  || |||||| ||||||| ||||||||||| |||| ||||||||| |||||  |    
T  25396340 atgcacaattaataataatcatactaatgcatcaagttcattcaacctagtatatattcacttggtttcatactcaatcatatccaaaattcactaaatt 25396439  T
Q  200 caaccaaattcgatcatcagagcgttt-agtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tccc 297  Q
    ||||||| |||||| | ||  | |||| |||||| ||| | | | ||||||||| ||||| ||||||||||| | |||||||||||||||||||| | ||    
T  25396440 caaccaa-ttcgattaccaatgtgtttcagtaggattcag-tgcatatacaagggttatacaagttgaaagaaacattttagaatgctcaaaaggattcc 25396537  T
Q  298 ctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttggg 397  Q
    || | ||||| ||||| | |||| ||||||| ||||||||  | |||||||||||||||||||| | |||||| |||||||| |||||||  |||| |||    
T  25396538 ct-agtgcactaagcataattcaaaaagtggttgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacagagagttgggg 25396636  T
Q  398 ttcagctcgcttacggtt 415  Q
    ||| ||||||| ||||||    
T  25396637 ttccgctcgctaacggtt 25396654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 281 - 415
Target Start/End: Complemental strand, 21565899 - 21565765
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||||| || ||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||    
T  21565899 aatgctcaaaagggtctcct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccg 21565801  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    ||||||||||||| ||||||| ||||||||||||||    
T  21565800 gcttacagtaagtctgggttctgctcgcttacggtt 21565765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 12167420 - 12167535
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  12167420 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 12167518  T
Q  119 tatgcacatacatcaat 135  Q
    |||||||||||||||||    
T  12167519 tatgcacatacatcaat 12167535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 19877513 - 19877628
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19877513 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19877611  T
Q  119 tatgcacatacatcaat 135  Q
    |||||||||||||||||    
T  19877612 tatgcacatacatcaat 19877628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 19883289 - 19883404
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19883289 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19883387  T
Q  119 tatgcacatacatcaat 135  Q
    |||||||||||||||||    
T  19883388 tatgcacatacatcaat 19883404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 254 - 444
Target Start/End: Complemental strand, 19472080 - 19471891
Alignment:
Q  254 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 352  Q
    ||||| |||||||| || | |||| | ||||||||||||| |||||| | ||||| ||||||| |||| |||||||||||| |||  |  ||||||||||    
T  19472080 ttatacaagttgaaggaaacatttcaaaatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgac-aagaccttcttcgcttaa 19471983  T
Q  353 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctg 444  Q
    |||| |||| | |||||| ||||||||||| |||| ||||| |||||| ||||||| |||| | |||  |||||||||| ||||||||||||    
T  19471982 gcgatggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggctcgcttgcggttcgcttaagcgaacttctg 19471891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 20008604 - 20008493
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  |    
T  20008604 ttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 20008505  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  20008504 ggcagaatcaaa 20008493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 19286329 - 19286444
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    ||||||||||||||||||||||||| |||| ||||||||| | ||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19286329 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19286427  T
Q  119 tatgcacatacatcaat 135  Q
    |||||||||||||||||    
T  19286428 tatgcacatacatcaat 19286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 19786866 - 19786751
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    ||||||||||||||||||||||||| || | ||||||||| ||||||||||||| || ||| |  || ||||||||||| | | | |||||| |||||||    
T  19786866 acctgtgtatatctacatacaactcgactactacatatgtatcatatgacttactactccataactcaaacaatccaga-cttacacaattatttataat 19786768  T
Q  119 tatgcacatacatcaat 135  Q
    |||||||||||||||||    
T  19786767 tatgcacatacatcaat 19786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 9186827 - 9186903
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 357  Q
    ||||||||||||| |||||| | ||||| |||||||||||| |||||||||||||||||||  |||||||||||||||    
T  9186827 aatgctcaaaaggatcccct-agtgcacgaagcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 420
Target Start/End: Complemental strand, 19300495 - 19300317
Alignment:
Q  242 cctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtc 340  Q
    ||||||||||| ||||| ||| | ||||| | | || | ||| ||||||||| |||||| | ||||| |||||||||||||| || ||||||||||||      
T  19300495 cctatacaagggttatacaagctaaaagaaacacttaaaaatactcaaaagggtcccct-agtgcacgaagcaaagttcagatagaggctgactaaggct 19300397  T
Q  341 cacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgcttacggtttgctc 420  Q
    ||  |||||||||||| || ||| |||||| ||||||| || ||||| |||||||| |||  ||||||| |||||| ||||    
T  19300396 catctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctcgctcgctcacggttcgctc 19300317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 24513553 - 24513456
Alignment:
Q  260 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 357  Q
    ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||| ||||| |||||||||||||||||||  |||||||||||||||    
T  24513553 aagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaggttcaaaaagtggctgactaaggtcatcttcgcttaagcgac 24513456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 19439888 - 19439921
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatat 56  Q
    ||||||||||||||||||||||||||||||||||    
T  19439888 tgtgtatatctacatacaactcaaccatacatat 19439921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 24513423 - 24513370
Alignment:
Q  421 acggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    ||||||||||||||||||||||||  ||||| |||||| ||||||||| |||||    
T  24513423 acggttcgcttgagcgaacttctggaagaatgaaaatgatttttcgcttacagg 24513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 23105384 - 23105440
Alignment:
Q  25 tgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  23105384 tgtatatctacatacaactgaacaatgcatatatataatatgacttacaaccccaca 23105440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 24513469 - 24513425
Alignment:
Q  364 ttcgcttgagcgaccggcttacagtaagtttgggttcagctcgct 408  Q
    ||||||| ||||||||||| |||| |||||||||||| |||||||    
T  24513469 ttcgcttaagcgaccggctcacagaaagtttgggttccgctcgct 24513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 24562463 - 24562491
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  24562463 aacctgtgtatatctacatacaactcaac 24562491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 8e-84; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 23 - 477
Target Start/End: Original strand, 18914193 - 18914646
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataattatg 122  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || || ||||||||||||||||||| | ||||||||||||||||||    
T  18914193 tgtgtatatctacatacaacttaacaatacatatgtttcatatgacttacaactccgcaattccaacaatccagaacatacacaattaattataattatg 18914292  T
Q  123 cacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcatcagagc 222  Q
    | ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| | ||||| ||||  ||||     
T  18914293 ctcatacatcaatttcattcaacataatatatattcacttgatttcatactcaatcatctccaaaattcactaacatcaa-ctaattccatcaatagagt 18914391  T
Q  223 g-tttagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagc-aaagttc 319  Q
    | ||||||||| || || |   |||| || | ||||| |||||| |||| ||||| |   |||||||||||| |||||| ||||||| | || ||| |||    
T  18914392 gttttagtaggattatg-tgtatatataaaggttatacaagttggaagaaatattattatatgctcaaaaggatcccct-aatgcacgaggcaaaaattc 18914489  T
Q  320 agaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgct 419  Q
    | |||||||||||||||||||  |||||||||||||| |||  |||||||| ||||||||||||| ||  |||| |||||| ||||||| | |||| |||    
T  18914490 a-aaagtggctgactaaggtcatcttcgcttaagcgatggcaggttcgcttaagcgaccggcttatagagagttggggttccgctcgctaaaggttcgct 18914588  T
Q  420 cacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
      |||||| ||| |||||||||||| ||||||  || || ||||||||| || |||||    
T  18914589 tgcggttcacttaagcgaacttctggcagaatggaattgatttttcgcttacgggttc 18914646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 20 - 471
Target Start/End: Complemental strand, 41456142 - 41455687
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||||| || ||  |  || |||||| |||||||| | |||||| |||||||    
T  41456142 acctgtgtatatctacatacaactcaactaatgcatatgtttcatatgacttactactccgtaactcaaacaattcagaacattcacaattatttataat 41456043  T
Q  119 tatgcacatacatcaatttcattcaat-gtaatatataatcacttgat-ttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcat 216  Q
    ||||| | ||||||||||||||||||| ||  |||||  |||||| || ||| |||||| | |||||||| ||||||||||| ||| ||| ||||||       
T  41456042 tatgcgcttacatcaatttcattcaatagttgtatat--tcacttaatcttcctactcaattatctccaacatttactaacaccaatcaa-ttcgattgc 41455946  T
Q  217 cagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatatttta-gaatgctcaaaaggtcccctcaatgcacaaagcaa 314  Q
    |||   ||| ||||||| ||||| ||||||||| ||||||||| ||||| ||||||  | || | ||| |||||  | ||||||||| ||||| ||||||    
T  41455945 cagcttgttctagtaggattctgatacctatactaggattatacaagtt-aaagaggaagttaaagaacgctcaggaagtcccctca-tgcactaagcaa 41455848  T
Q  315 -agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacg 412  Q
     ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||| |||||||||    
T  41455847 cagttcagaaaaaggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacg 41455748  T
Q  413 gtttgctcacggttcgcttgagcgaacttctgacagaatcaaaa--tggtttttcgctcac 471  Q
    | | |||||||||||||||||||||||||  |||||||||||||  |||||||||||||||    
T  41455747 ggtcgctcacggttcgcttgagcgaactttggacagaatcaaaaattggtttttcgctcac 41455687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 325 - 471
Target Start/End: Original strand, 24192272 - 24192418
Alignment:
Q  325 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacgg 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||    
T  24192272 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcaactcacttacggttcgctcacgg 24192371  T
Q  425 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24192372 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 24192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 281 - 415
Target Start/End: Complemental strand, 16802175 - 16802041
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||||| |||||| ||||||  | |||||||||| ||||||||| ||||||||| ||||||||||| |||||||||| |||||| ||||||||    
T  16802175 aatgctcaaaagggtcccct-aatgcatgaggcaaagttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccg 16802077  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    ||||||||||||| ||||||| ||||||||||||||    
T  16802076 gcttacagtaagtctgggttctgctcgcttacggtt 16802041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 240 - 413
Target Start/End: Complemental strand, 13324549 - 13324376
Alignment:
Q  240 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 338  Q
    ||||||||||||| ||||||||| ||||||| | || || |||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13324549 tacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13324451  T
Q  339 tccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacgg 413  Q
      ||  |||||||||||| |||| | |||||| |||||| ||||| ||| |||||||||||  ||||||| ||||    
T  13324450 ctcagctcgcttaagcgaaggctggctcgcttaagcgactggcttgcagaaagtttgggttttgctcgctgacgg 13324376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 311 - 415
Target Start/End: Complemental strand, 55499804 - 55499700
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||| ||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||| |||||||||    
T  55499804 gcaacgttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtaagtctaggttctgctcgctta 55499705  T
Q  411 cggtt 415  Q
    |||||    
T  55499704 cggtt 55499700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 13302961 - 13302844
Alignment:
Q  240 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 338  Q
    ||||||||||||| ||||||||| ||||||| | || || |||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13302961 tacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13302863  T
Q  339 tccacttcgcttaagcgac 357  Q
      ||  |||||||||||||    
T  13302862 ctcagctcgcttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 438
Target Start/End: Original strand, 14865184 - 14865338
Alignment:
Q  285 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcga-cggctagttcgcttgagcgaccggctt 383  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || ||||||||||||| |||||||||||||| ||||||| ||||    
T  14865184 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgaacggctagttcgcttaagcgaccagctt 14865283  T
Q  384 acagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaa 438  Q
    | |||| || ||||||||| |||||||||| | |||||||| |||||| ||||||    
T  14865284 agagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaa 14865338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 361 - 477
Target Start/End: Complemental strand, 17241201 - 17241085
Alignment:
Q  361 tagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggt 460  Q
    |||||||||| |||||||| |||| ||  |||| |||||| ||||||| |||||| |||  |||||||||||||||||||||||||||||| ||| || |    
T  17241201 tagttcgcttaagcgaccgacttatagagagttggggttccgctcgctgacggttcgcttgcggttcgcttgagcgaacttctgacagaatgaaattgat 17241102  T
Q  461 ttttcgctcacaggttc 477  Q
    |||||||| || |||||    
T  17241101 ttttcgcttacgggttc 17241085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 13313637 - 13313520
Alignment:
Q  240 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 338  Q
    ||||||||||||| ||||||||| ||||||| | || ||  ||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13313637 tacctatacaagggttatataagctgaaagaaacatctttaaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13313539  T
Q  339 tccacttcgcttaagcgac 357  Q
      ||  |||||||||||||    
T  13313538 ctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 18136177 - 18136117
Alignment:
Q  84 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 144  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  18136177 tccaacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 18136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 10390104 - 10390034
Alignment:
Q  404 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacag 473  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  10390104 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10390034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 10415193 - 10415123
Alignment:
Q  404 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacag 473  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  10415193 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 10421863 - 10421793
Alignment:
Q  404 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacag 473  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  10421863 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 13036973 - 13036915
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||    
T  13036973 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 13036915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 365
Target Start/End: Complemental strand, 17243343 - 17243260
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagtt 365  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  |||||||||||||| ||||||||    
T  17243343 aatgctcaaaaggatcccct-agtgcacgaggcaaagttca-aaagtggctgactaaggtcatcttcgcttaagcgatggctagtt 17243260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 18136306 - 18136253
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatg-tttcatatgacttacaac 75  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||    
T  18136306 tgtgtatatctacatacaacttaaccatgcatatgttttcatatgacttacaac 18136253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 18129663 - 18129607
Alignment:
Q  84 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcat 140  Q
    ||||||||| |||||||| | ||||||||||||||||||| | ||||||||||||||    
T  18129663 tccaacaattcagaacattcacaattaattataattatgctcgtacatcaatttcat 18129607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 18129792 - 18129733
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacata-tgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||| |||||| |||| | |||||||||||||||||| |||||    
T  18129792 tgtgtatatctacatacaacttaaccatgcatattttttcatatgacttacaactccaca 18129733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 31690586 - 31690553
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatat 56  Q
    ||||||||||||||||||||||||||||||||||    
T  31690586 tgtgtatatctacatacaactcaaccatacatat 31690553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 31943629 - 31943662
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatat 56  Q
    ||||||||||||||||||||||||||||||||||    
T  31943629 tgtgtatatctacatacaactcaaccatacatat 31943662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 13968829 - 13968801
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  13968829 aacctgtgtatatctacatacaactcaac 13968801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 13974304 - 13974276
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  13974304 aacctgtgtatatctacatacaactcaac 13974276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14084712 - 14084740
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  14084712 aacctgtgtatatctacatacaactcaac 14084740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 14090113 - 14090141
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  14090113 aacctgtgtatatctacatacaactcaac 14090141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 24123199 - 24123171
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  24123199 aacctgtgtatatctacatacaactcaac 24123171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 49399654 - 49399682
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  49399654 aacctgtgtatatctacatacaactcaac 49399682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 325 - 471
Target Start/End: Complemental strand, 15123 - 14977
Alignment:
Q  325 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacgg 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  15123 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcagctcgcttacggttcgctcacgg 15024  T
Q  425 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15023 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 240 - 471
Target Start/End: Original strand, 13742945 - 13743174
Alignment:
Q  240 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagcaaa-gttcagaaagtggctgactaagg 338  Q
    |||||| || ||| |||||  |||| ||||| ||||| |||||||||||| | ||||||||| ||||| || |||| ||||||||   ||||||||||||    
T  13742945 tacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctca-tgcacgaaacaaaagttcagaa---ggctgactaagg 13743040  T
Q  339 tccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaa 438  Q
      |||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||| | ||||||||||||||||||||||    
T  13743041 ctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttatagtaggtctgggttcagctcgcttacgggtcgctcacggttcgcttgagcgaa 13743140  T
Q  439 cttctgacagaatc-aaaatggtttttcgctcac 471  Q
    |||  ||||||||| ||||| |||||||||||||    
T  13743141 ctttggacagaatcaaaaattgtttttcgctcac 13743174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 279 - 474
Target Start/End: Original strand, 13006706 - 13006901
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  13006706 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 13006803  T
Q  378 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  13006804 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 13006901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 278 - 471
Target Start/End: Complemental strand, 13123698 - 13123506
Alignment:
Q  278 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 376  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   ||||||||||||||||||||||| |||||| |||||    
T  13123698 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcga 13123601  T
Q  377 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    ||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13123600 ccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 13123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 328 - 474
Target Start/End: Complemental strand, 12591377 - 12591230
Alignment:
Q  328 gctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggtt 426  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | ||||||||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggatctgggatcagttcgcttacgggtcgctcacggtt 12591278  T
Q  427 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||    
T  12591277 cgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 12591230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 254 - 477
Target Start/End: Original strand, 13678772 - 13678995
Alignment:
Q  254 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 352  Q
    ||||| || |||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  13678772 ttatacaaattgaaagaaacattttttaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 13678870  T
Q  353 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatc 452  Q
    ||||||||| |||||||| ||||||||||||||||  |||| |||||   |||||| ||| || |||  |||||||||| |||||||||||||||||||     
T  13678871 gcgacggctggttcgcttaagcgaccggcttacagagagttggggtttccctcgctaacgtttcgcttgcggttcgcttaagcgaacttctgacagaatg 13678970  T
Q  453 aaaatggtttttcgctcacaggttc 477  Q
     ||||| ||||||||| || |||||    
T  13678971 gaaatgatttttcgcttacgggttc 13678995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 281 - 477
Target Start/End: Original strand, 16676660 - 16676845
Alignment:
Q  281 aatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||| |||||||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  16676660 aatgctcaaaagggtcccct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagttcgcttaagcgaccg 16676758  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
    ||||||||||||| ||||||| ||||||||           | |||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  16676759 gcttacagtaagtctgggttccgctcgctt-----------atggttcgcttgagcgaattcttgacagaatcaaaatggtttttcgcttacaggttc 16676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 281 - 477
Target Start/End: Original strand, 17650896 - 17651081
Alignment:
Q  281 aatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||| |||||||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  17650896 aatgctcaaaagggtcccct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagttcgcttaagcgaccg 17650994  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
    ||||||||||||| ||||||| ||||||||           | |||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  17650995 gcttacagtaagtctgggttccgctcgctt-----------atggttcgcttgagcgaattcttgacagaatcaaaatggtttttcgcttacaggttc 17651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 278 - 471
Target Start/End: Complemental strand, 12710627 - 12710435
Alignment:
Q  278 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 376  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   ||||||||||||||||||||||| |||||| |||||    
T  12710627 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcga 12710530  T
Q  377 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    ||  ||||||||| || ||||||||| |||||||| | | |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  12710529 ccaacttacagtaggtctgggttcagttcgcttacaggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttggctcac 12710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 3858082 - 3857953
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||      
T  3858082 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttg 3857983  T
Q  444 gacagaatc-aaaatggtttttcgctcaca 472  Q
     |||||||| ||||||||||||||||||||    
T  3857982 aacagaatcaaaaatggtttttcgctcaca 3857953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 311 - 415
Target Start/End: Complemental strand, 11390026 - 11389922
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||| |||||| |||||||| || ||||||||| ||||||| |||||||||    
T  11390026 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagctcgcttaagcgaccgactcacagtaagtctgggttccgctcgctta 11389927  T
Q  411 cggtt 415  Q
    |||||    
T  11389926 cggtt 11389922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 311 - 455
Target Start/End: Complemental strand, 20311740 - 20311597
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| ||||||||| ||| |||||  ||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||    
T  20311740 gcaaagttca-aaagtggctaactgaggtcatcttcgcttaagcgacggctagctcgcttaagcgaccggcttgcagtaagtctgggttctgctcgctta 20311642  T
Q  411 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 455  Q
    ||||| |||  |||||||||| |||||| |  || ||||||||||    
T  20311641 cggttcgcttgcggttcgcttaagcgaattcttggcagaatcaaa 20311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 260 - 449
Target Start/End: Original strand, 46625275 - 46625464
Alignment:
Q  260 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 358  Q
    ||||||||||| | |||||| ||||||||||||| | |||| | ||||| || |||| |||| | ||||||||||||||  | |||||||||||||||||    
T  46625275 aagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaaacaaaattcaaagagtggctgactaagacctacttcgcttaagcgacg 46625373  T
Q  359 gctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacaga 449  Q
    ||| | |||||| ||||||| ||||||||  |||| | |||| ||||||| | ||||||||| |||||||||| |||||||||||| ||||    
T  46625374 gctggctcgcttaagcgacctgcttacagagagttggcgttctgctcgctaatggtttgctcgcggttcgcttaagcgaacttctggcaga 46625464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 2464763 - 2464874
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||| ||||||||      
T  2464763 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaactttg 2464862  T
Q  444 gacagaatcaaa 455  Q
    ||||||||||||    
T  2464863 gacagaatcaaa 2464874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 311 - 409
Target Start/End: Complemental strand, 11383538 - 11383440
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctt 409  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||| |||||| |||||| |||| ||||||||| ||||||| ||||||||    
T  11383538 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacagtaagtctgggttccgctcgctt 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 13742686 - 13742803
Alignment:
Q  19 aacctgtgtatatctacatacaactcaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    |||||||||||||| ||||||||||| || || |||||||||||||||||||||| || |||||  || ||||||||||||||| | |||||| ||||||    
T  13742686 aacctgtgtatatcaacatacaactcgactattacatatgtttcatatgacttactactccacaactcaaacaatccagaacatacacaattatttataa 13742785  T
Q  118 ttatgcacatacatcaat 135  Q
    |||||| |||||||||||    
T  13742786 ttatgctcatacatcaat 13742803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 455
Target Start/End: Original strand, 16090425 - 16090595
Alignment:
Q  285 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggctta 384  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || |||||||||||||||||||| |||||| |||||||  ||||    
T  16090425 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatctta 16090524  T
Q  385 cagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 455  Q
    ||||| || ||||||||| |||||||||| | |||||||| | |||| |||||| |  || ||||||||||    
T  16090525 cagtaggtctgggttcagttcgcttacgggtcgctcacggcttgcttaagcgaattcttggcagaatcaaa 16090595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 13123967 - 13123851
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||||||||||  || |||||  | | ||||| |||||||| | |||||| ||||||    
T  13123967 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaattcagaacatacacaattatttataa 13123869  T
Q  118 ttatgcacatacatcaat 135  Q
    ||||||||||||||||||    
T  13123868 ttatgcacatacatcaat 13123851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 13006489 - 13006604
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    ||||||||||||||||||||||||| |||| ||||||||| | ||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  13006489 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 13006587  T
Q  119 tatgcacatacatcaat 135  Q
    |||||||||||||||||    
T  13006588 tatgcacatacatcaat 13006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 283 - 455
Target Start/End: Complemental strand, 29181826 - 29181654
Alignment:
Q  283 tgctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggct 382  Q
    |||||||||||  |||| | ||||| |||||| |||||||||  | ||||||||    || || ||||||||||||||||| |||||| |||||||  ||    
T  29181826 tgctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaagactgactaacactcagtttgcttaagcgacggctagctcgcttaagcgaccatct 29181727  T
Q  383 tacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 455  Q
    ||||||| || ||||||||| ||||||| || | |||||||| |||||| ||||||||  || ||||||||||    
T  29181726 tacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaactcttggcagaatcaaa 29181654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 12710896 - 12710780
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||||||||||  || ||| |  | | ||||| |||||||| | |||||| ||||||    
T  12710896 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccataact-cgacaattcagaacatacacaattatttataa 12710798  T
Q  118 ttatgcacatacatcaat 135  Q
    ||||||||||||||||||    
T  12710797 ttatgcacatacatcaat 12710780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 439
Target Start/End: Complemental strand, 14320316 - 14320192
Alignment:
Q  316 gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgcttacggt 414  Q
    |||||||||  ||||||||||||  || ||||||||||||| || ||| |||||| ||||||||||| |||| |||||  ||| |  ||||||| || ||    
T  14320316 gttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaaagttgaggtcctcgctcgctcacagt 14320217  T
Q  415 ttgctcacggttcgcttgagcgaac 439  Q
    | |||||||||||||||||||||||    
T  14320216 tcgctcacggttcgcttgagcgaac 14320192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 415
Target Start/End: Complemental strand, 21231674 - 21231571
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| |||||||||||| ||||||  |||||||||||||||| | |||| |||| ||||||| ||| |||| ||||| |||||| ||||||| |    
T  21231674 gcaaagttca-aaagtggctgacaaaggtcatcttcgcttaagcgacgaccagtttgcttaagcgaccagctcacagaaagttggggttccgctcgctga 21231576  T
Q  411 cggtt 415  Q
    |||||    
T  21231575 cggtt 21231571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 12694777 - 12694835
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||    
T  12694777 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 12694835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 15142390 - 15142448
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    |||||||||||||||||||||| || || ||||| | | ||||||||||||||||||||    
T  15142390 tgtgtatatctacatacaactccacaatgcatatatataatatgacttacaaccccaca 15142448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 1612809 - 1612842
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatat 56  Q
    ||||||||||||||||||||||||||||||||||    
T  1612809 tgtgtatatctacatacaactcaaccatacatat 1612842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 14945856 - 14945802
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatg--tttcatatgacttacaac 75  Q
    ||||||||||||||||||||| ||| || ||||||  ||||||||||||||||||    
T  14945856 tgtgtatatctacatacaactaaacaatgcatatgtttttcatatgacttacaac 14945802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 15373449 - 15373395
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatg--tttcatatgacttacaac 75  Q
    ||||||||||||||||||||| ||| || ||||||  ||||||||||||||||||    
T  15373449 tgtgtatatctacatacaactaaacaatgcatatgtttttcatatgacttacaac 15373395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 16073954 - 16073896
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    |||||||||||||||||||||||||  | ||||| | | ||||||||||| ||||||||    
T  16073954 tgtgtatatctacatacaactcaacagtgcatatatataatatgacttaccaccccaca 16073896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 16476121 - 16476067
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||| | || ||||| | | ||||||||||||||||    
T  16476121 tgtgtatatctacatacaactcatcaatgcatatatataatatgacttacaaccc 16476067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 4280144 - 4280172
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  4280144 aacctgtgtatatctacatacaactcaac 4280172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 13678982 - 13679030
Alignment:
Q  404 tcgcttacggttt-gctcacggttcgcttgagcgaacttctgacagaat 451  Q
    |||||||||| || ||||||||||||||||||||| | |||||||||||    
T  13678982 tcgcttacgggttcgctcacggttcgcttgagcgagcgtctgacagaat 13679030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 19616476 - 19616504
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  19616476 aacctgtgtatatctacatacaactcaac 19616504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 279 - 474
Target Start/End: Original strand, 23527904 - 23528099
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  23527904 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 23528001  T
Q  378 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  23528002 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 23528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 311 - 451
Target Start/End: Complemental strand, 18408631 - 18408491
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| |||||||||||||||||||   |||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||| ||||||| |    
T  18408631 gcaaagttcaaaaagtggctgactaaggtcattttcgcttaagcgacggctagtttgcttaagcgaccggcttacagaaagttggggttccgctcgctaa 18408532  T
Q  411 cggtttgctcacggttcgcttgagcgaacttctgacagaat 451  Q
    ||||| |||  ||  |||||| |||||||||||| ||||||    
T  18408531 cggttcgcttgcgactcgcttaagcgaacttctggcagaat 18408491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 28890053 - 28889925
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28890053 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28889954  T
Q  444 gacagaatcaaaatggtttttcgctcaca 472  Q
    ||||||| |||||||||||||||||||||    
T  28889953 gacagaaacaaaatggtttttcgctcaca 28889925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 28896757 - 28896629
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28896757 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28896658  T
Q  444 gacagaatcaaaatggtttttcgctcaca 472  Q
    ||||||| |||||||||||||||||||||    
T  28896657 gacagaaacaaaatggtttttcgctcaca 28896629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 28910005 - 28909877
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28910005 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28909906  T
Q  444 gacagaatcaaaatggtttttcgctcaca 472  Q
    ||||||| |||||||||||||||||||||    
T  28909905 gacagaaacaaaatggtttttcgctcaca 28909877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 28931697 - 28931569
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28931697 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28931598  T
Q  444 gacagaatcaaaatggtttttcgctcaca 472  Q
    ||||||| |||||||||||||||||||||    
T  28931597 gacagaaacaaaatggtttttcgctcaca 28931569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 28946400 - 28946272
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28946400 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28946301  T
Q  444 gacagaatcaaaatggtttttcgctcaca 472  Q
    ||||||| |||||||||||||||||||||    
T  28946300 gacagaaacaaaatggtttttcgctcaca 28946272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 19236299 - 19236410
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| ||||||| || | |||||||| |||||| |||||| |  |    
T  19236299 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattctt 19236398  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  19236399 ggcagaatcaaa 19236410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 455
Target Start/End: Original strand, 22467181 - 22467290
Alignment:
Q  346 cgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctga 445  Q
    ||||||||||||||||||||||||| | ||||| |||||||||| || ||||||||| ||||||| || | |||||||| |||||| |||||| |  ||     
T  22467181 cgcttaagcgacggctagttcgcttaaccgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattcttgg 22467280  T
Q  446 cagaatcaaa 455  Q
    ||||||||||    
T  22467281 cagaatcaaa 22467290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 23527632 - 23527747
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| || |||||  || || ||||||| ||   | |||||| |||||||    
T  23527632 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaataatccag-actgacacaattatttataat 23527730  T
Q  119 tatgcacatacatcaat 135  Q
    |||||||||||||||||    
T  23527731 tatgcacatacatcaat 23527747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 22460555 - 22460666
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||  ||||||| || |  ||||||| |||||| |||||| |  |    
T  22460555 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcaattcgcttatgggtcactcacggctcgcttaagcgaattctt 22460654  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  22460655 ggcagaatcaaa 22460666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 22232496 - 22232436
Alignment:
Q  84 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 144  Q
    |||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||    
T  22232496 tccaacaatccagaacatacacgattaattataattatgctcatacatcaatttcattcaa 22232436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 28933200 - 28933070
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttggg-ttcagctcgcttacggtttgctcacggttcgcttgagcgaacttc 442  Q
    ||||||||||| |||||||  |||||| | |||||  ||||||||| || |||| ||||| |||||||||| | |||||||| ||||||  ||||||||     
T  28933200 ttcgcttaagccacggctatctcgcttaaacgaccaacttacagtaggtctggggttcagttcgcttacgggtcgctcacggctcgctttggcgaacttt 28933101  T
Q  443 tgacagaatcaaaa-tggtttttcgctcaca 472  Q
     ||||||| ||||| ||||||||||||||||    
T  28933100 ggacagaaacaaaaatggtttttcgctcaca 28933070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 20819618 - 20819689
Alignment:
Q  404 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  20819618 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20819689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 20826718 - 20826789
Alignment:
Q  404 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  20826718 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20826789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 439
Target Start/End: Original strand, 34829441 - 34829578
Alignment:
Q  303 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-a 401  Q
    ||||| ||||||||||||||||  || |||||||||  || ||||||||||||| || ||| |||||| ||||||| ||| |||  | ||| ||||||      
T  34829441 tgcacgaagcaaagttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggttggggttctc 34829540  T
Q  402 gctcgcttacggtttgctcacggttcgcttgagcgaac 439  Q
    |||| || |||||| |||| | ||||||||||||||||    
T  34829541 gctcactcacggttcgctcgcagttcgcttgagcgaac 34829578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 10035305 - 10035359
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||    
T  10035305 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 10035359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 21901849 - 21901795
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||    
T  21901849 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 21901795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 18819096 - 18819149
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaacc 76  Q
    ||||||||||||||||||||||||| || ||||| | | |||||||||||||||    
T  18819096 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaacc 18819149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 22439370 - 22439322
Alignment:
Q  367 gcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||| ||||    
T  22439370 gcttaagcgaccggcttacagtaagtctgggttctgctcgcttaaggtt 22439322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 21869538 - 21869484
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||||| || ||||| | | |||||||||| |||||    
T  21869538 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttataaccc 21869484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 21873818 - 21873764
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||||| || ||||| | | |||||||||| |||||    
T  21873818 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttataaccc 21873764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 22232625 - 22232575
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatg-tttcatatgacttac 72  Q
    ||||||||||||||||||||| ||| || |||||| |||||||||||||||    
T  22232625 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttac 22232575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 22439406 - 22439360
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 357  Q
    |||| ||||| ||||||||||||||||||| |||| |||||||||||    
T  22439406 gcaacgttcaaaaagtggctgactaaggtcaactttgcttaagcgac 22439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 25013745 - 25013803
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||| ||| || ||||| | | | ||||||||||||||||||    
T  25013745 tgtgtatatctacatacaacttaacaatgcatatatataaaatgacttacaaccccaca 25013803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 1857499 - 1857471
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  1857499 aacctgtgtatatctacatacaactcaac 1857471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 21624719 - 21624751
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacata 55  Q
    ||||||||||||||||||||||||| |||||||    
T  21624719 tgtgtatatctacatacaactcaacaatacata 21624751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 21675467 - 21675439
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  21675467 aacctgtgtatatctacatacaactcaac 21675439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 279 - 472
Target Start/End: Original strand, 41111214 - 41111407
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  41111214 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 41111311  T
Q  378 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcaca 472  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  41111312 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 41111407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 313 - 414
Target Start/End: Original strand, 18712117 - 18712218
Alignment:
Q  313 aaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacg 412  Q
    |||||||| || ||||||||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||| ||||||| |||    
T  18712117 aaagttcaaaaggtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaaagttggggttccgctcgctaacg 18712216  T
Q  413 gt 414  Q
    ||    
T  18712217 gt 18712218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 20858416 - 20858305
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  |    
T  20858416 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 20858317  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  20858316 ggcagaatcaaa 20858305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 21705674 - 21705785
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  |    
T  21705674 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 21705773  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  21705774 ggcagaatcaaa 21705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 21710217 - 21710328
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| ||||||| |||| |||||||| |||||| |||||| |  |    
T  21710217 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatggttcgctcacggctcgcttaagcgaattctt 21710316  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  21710317 ggcagaatcaaa 21710328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 41110997 - 41111112
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 118  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  41110997 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 41111095  T
Q  119 tatgcacatacatcaat 135  Q
    |||||||||||||||||    
T  41111096 tatgcacatacatcaat 41111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 20851789 - 20851678
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| ||||||| || | |||||||| |||||| |||||| |  |    
T  20851789 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattctt 20851690  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  20851689 ggcagaatcaaa 20851678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 20941717 - 20941657
Alignment:
Q  84 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 144  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  20941717 tccaacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 20941657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 244 - 449
Target Start/End: Complemental strand, 22030504 - 22030298
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    ||||||| | ||||| ||||||||||| | ||| |||||||||||||||| |  ||| | ||||  |||||||  | | ||||||||||||||||  |      
T  22030504 tatacaaaggttatacaagttgaaagaaacattatagaatgctcaaaaggatttcct-agtgcaagaagcaaaaattaaaaagtggctgactaagacctt 22030406  T
Q  343 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggttt-gctcacggttcgcttgagcgaactt 441  Q
    |||||||||||||| |||| | |||||| |||||| |||||||||  |||| | |||| ||||||| | ||||| ||||||||||||||  |||||||||    
T  22030405 cttcgcttaagcgaaggctggctcgcttaagcgactggcttacagagagttggtgttctgctcgctaagggtttcgctcacggttcgctcaagcgaactt 22030306  T
Q  442 ctgacaga 449  Q
    ||| ||||    
T  22030305 ctggcaga 22030298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 11157441 - 11157554
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    |||| |||| ||||| ||||||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| ||||||| |||||||||||      
T  11157441 tatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggttgactaaggtcat 11157539  T
Q  343 cttcgcttaagcgac 357  Q
    |||||||||||||||    
T  11157540 cttcgcttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 19961547 - 19961684
Alignment:
Q  303 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-a 401  Q
    ||||| |||||||||||||| || ||||||||||||  ||  |||||||||||| || ||| |||||| ||||||| || ||||| |||||||| |||      
T  19961547 tgcacgaagcaaagttcagatagaggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctc 19961645  T
Q  402 gctcgcttacggtttgctcacggttcgcttgagcgaact 440  Q
    ||||||| |||||| |||  ||||||||| |||||||||    
T  19961646 gctcgctcacggttcgcttgcggttcgctcgagcgaact 19961684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 20941846 - 20941793
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatg-tttcatatgacttacaac 75  Q
    ||||||||||||||||||||| ||| || |||||| ||||||||||||||||||    
T  20941846 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaac 20941793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 21698285 - 21698344
Alignment:
Q  23 tgtgtatatctacatacaact-caaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||| |||| || ||||| | | ||||||||||||||||||||    
T  21698285 tgtgtatatctacatacaactccaacaatgcatatatataatatgacttacaaccccaca 21698344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 23631145 - 23631203
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||| ||| || ||||| | | |||||||||||||| |||||    
T  23631145 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttacaactccaca 23631203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 21542237 - 21542265
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  21542237 aacctgtgtatatctacatacaactcaac 21542265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 42095899 - 42095871
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  42095899 aacctgtgtatatctacatacaactcaac 42095871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 278 - 471
Target Start/End: Original strand, 452 - 644
Alignment:
Q  278 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 376  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   |||||||||||||||||||||||||||||| |||||    
T  452 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctagttcgcttaagcga 549  T
Q  377 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    || |||||||||| || ||||||||| |||||||||| | |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  550 ccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 153 - 269
Alignment:
Q  19 aacctgtgtatatctacatacaactcaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||||||| || |||||  || ||||||||||||||| | |||||| ||||||    
T  153 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactccacagctc-aacaatccagaacatacacaattatttataa 251  T
Q  118 ttatgcacatacatcaat 135  Q
    ||||||||| ||||||||    
T  252 ttatgcacacacatcaat 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 278 - 474
Target Start/End: Complemental strand, 8046616 - 8046420
Alignment:
Q  278 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 376  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  ||||||||||||  |||||||||||||||||| |||| |||||| |||||    
T  8046616 tagaatgctcaagaagtcccctca-tgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgcttaagcgacgtctagctcgcttaagcga 8046518  T
Q  377 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    ||  |||| |||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  8046517 ccaacttatagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 8046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 327 - 474
Target Start/End: Original strand, 53483023 - 53483171
Alignment:
Q  327 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggt 425  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | |||||||||    
T  53483023 ggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 53483122  T
Q  426 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  53483123 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 53483171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 303 - 455
Target Start/End: Original strand, 11847462 - 11847614
Alignment:
Q  303 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-a 401  Q
    ||||||||||||||||||||||| ||||||||||||  ||  ||||||||||||||| |||||||||| |||||||  | ||||| |||||||| ||| |    
T  11847462 tgcacaaagcaaagttcagaaagaggctgactaaggctcagctcgcttaagcgacgggtagttcgcttaagcgaccaac-tacaggaagtttggattcta 11847560  T
Q  402 gctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 455  Q
    |||||||||||| | ||||||||||||||| |||||| |  || ||||||||||    
T  11847561 gctcgcttacgggtcgctcacggttcgcttaagcgaattcttggcagaatcaaa 11847614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 311 - 477
Target Start/End: Original strand, 15407454 - 15407608
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| |||||||||||||| ||||  |||||||||||||||||| ||||||||| ||||||||||| |||| |||| | ||||| ||||         
T  15407454 gcaaagttca-aaagtggctgactatggtcatcttcgcttaagcgacggccagttcgcttaagcgaccggctcacagaaagtctaggttccgctc----- 15407547  T
Q  411 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
          ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  15407548 ------gctgacggttcgcttgagcgaacttctggcagaatcaaaatggtttttcgcttacgggttc 15407608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 455
Target Start/End: Complemental strand, 16147546 - 16147376
Alignment:
Q  285 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggctta 384  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || |||||||||||||||||||| |||||| |||||||  ||||    
T  16147546 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatctta 16147447  T
Q  385 cagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 455  Q
    ||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  || ||||||||||    
T  16147446 cagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggcagaatcaaa 16147376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 415
Target Start/End: Original strand, 14486049 - 14486140
Alignment:
Q  324 agtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    |||||||||||||||  |||||||||||||||| |||| | |||||| ||||||||||||||||  ||||||||||| ||||||| ||||||    
T  14486049 agtggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagagagtttgggttccgctcgctcacggtt 14486140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 303 - 449
Target Start/End: Original strand, 13887144 - 13887289
Alignment:
Q  303 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcag 402  Q
    ||||| ||||||| |||| ||||||||| ||||||  |  ||||||||||||||||||| | |||||| | ||||||||||||||  |||| | |||| |    
T  13887144 tgcacgaagcaaaattca-aaagtggctaactaagaccttcttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctg 13887242  T
Q  403 ctcgcttacggtttgctcacggttcgcttgagcgaacttctgacaga 449  Q
    |||||| | |||| || |||||||||||| ||| |||||||||||||    
T  13887243 ctcgctaatggttcgcgcacggttcgcttaagcaaacttctgacaga 13887289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 303 - 449
Target Start/End: Original strand, 13888001 - 13888146
Alignment:
Q  303 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcag 402  Q
    ||||| ||||||| |||| ||||||||| ||||||  |  ||||||||||||||||||| | |||||| | ||||||||||||||  |||| | |||| |    
T  13888001 tgcacgaagcaaaattca-aaagtggctaactaagaccttcttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctg 13888099  T
Q  403 ctcgcttacggtttgctcacggttcgcttgagcgaacttctgacaga 449  Q
    |||||| | |||| || |||||||||||| ||| |||||||||||||    
T  13888100 ctcgctaatggttcgcgcacggttcgcttaagcaaacttctgacaga 13888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 449
Target Start/End: Original strand, 15244587 - 15244719
Alignment:
Q  317 ttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggttt 416  Q
    |||| ||||||||||||||||  |  ||||| ||||||||||| |   |||||| ||||||||||||||||  |||| | |||| ||||||| | || |     
T  15244587 ttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggcttacagagagttggcgttccgctcgctaatggctc 15244686  T
Q  417 gctcacggttcgcttgagcgaacttctgacaga 449  Q
    ||||||||||||||| |||||||||||||||||    
T  15244687 gctcacggttcgcttaagcgaacttctgacaga 15244719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 322 - 445
Target Start/End: Original strand, 15307497 - 15307620
Alignment:
Q  322 aaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctca 421  Q
    ||||||||||||||||  |  |||||||||||||| |||| | |||||| |||||||| |||||||  |||| | |||| ||||||| | || | |||||    
T  15307497 aaagtggctgactaagaccttcttcgcttaagcgatggctggctcgcttaagcgaccgacttacagagagttggcgttccgctcgctaatggctcgctca 15307596  T
Q  422 cggttcgcttgagcgaacttctga 445  Q
    |||||||||| |||||||||||||    
T  15307597 cggttcgcttaagcgaacttctga 15307620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 14555941 - 14555881
Alignment:
Q  84 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 144  Q
    |||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||    
T  14555941 tccaacaatccagaacaaacacaattaattataattatgctcatacatcaatttcattcaa 14555881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 8046893 - 8046777
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    |||||||||||||||||||||||||| || | ||||||| ||||||||||||||| || |||||  | ||  |||||| | ||| | |||||| ||||||    
T  8046893 aacctgtgtatatctacatacaactcgactattacatatatttcatatgacttactactccacaact-cagtaatccaaatcatacacaattatttataa 8046795  T
Q  118 ttatgcacatacatcaat 135  Q
    ||||||||| ||||||||    
T  8046794 ttatgcacacacatcaat 8046777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 30237938 - 30237995
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccac 80  Q
    ||||||||||||||||||||||||| || ||||| | | |||||||||||||||||||    
T  30237938 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccac 30237995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 444
Target Start/End: Original strand, 8834185 - 8834385
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    ||||||| | ||||| ||||||||||| | ||||||||| |||||||||| | | || | ||||  |||||||  ||| ||||||||||||||||  |      
T  8834185 tatacaaaggttatacaagttgaaagaaacattttagaacgctcaaaaggattctct-agtgcatgaagcaaaaatcaaaaagtggctgactaagacctt 8834283  T
Q  343 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta-cggtttgctcacggttcgcttgagcgaactt 441  Q
    |||||||||||||| |||| | | | || ||||||||||||||||  |||| | |||| ||||||| |  |||| ||||||||||||||  ||| |||||    
T  8834284 cttcgcttaagcgaaggctggcttg-ttaagcgaccggcttacagagagttggtgttctgctcgctaaggggttcgctcacggttcgctcaagcaaactt 8834382  T
Q  442 ctg 444  Q
    |||    
T  8834383 ctg 8834385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 14485988 - 14486041
Alignment:
Q  240 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg 293  Q
    ||||||||||||| ||||| ||| ||||||| | ||||||||||||||||||||    
T  14485988 tacctatacaagggttatacaagctgaaagaaacattttagaatgctcaaaagg 14486041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 14821545 - 14821599
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||||| ||  |||| | | ||||||||||||||||    
T  14821545 tgtgtatatctacatacaactcaacaatgaatatatataatatgacttacaaccc 14821599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 8046745 - 8046692
Alignment:
Q  149 atatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaa 202  Q
    ||||||| ||||||| |||||||| || |||||||||| ||||||||||| |||    
T  8046745 atatatattcacttgttttcatacacaatcatctccaacatttactaacaccaa 8046692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 14556070 - 14556017
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatg-tttcatatgacttacaac 75  Q
    ||||||||||||||||||||| ||  || |||||| ||||||||||||||||||    
T  14556070 tgtgtatatctacatacaacttaataatgcatatgttttcatatgacttacaac 14556017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 26077702 - 26077669
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatat 56  Q
    |||||||||||||||||||||||||| |||||||    
T  26077702 tgtgtatatctacatacaactcaaccctacatat 26077669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 301 - 474
Target Start/End: Original strand, 10667 - 10829
Alignment:
Q  301 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc 400  Q
    ||||||| | |||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  10667 aatgcacgaggcaaagttcaaaaagtggctgactaagatcaacttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttc 10766  T
Q  401 agctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
     ||||||||           | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10767 tgctcgctt-----------agggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 278 - 471
Target Start/End: Original strand, 23865885 - 23866078
Alignment:
Q  278 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 376  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   ||||||||||||||||||||||| |||||| |||||    
T  23865885 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcga 23865983  T
Q  377 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    ||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  23865984 ccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgatcac 23866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 364 - 474
Target Start/End: Original strand, 17053949 - 17054060
Alignment:
Q  364 ttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggttt 462  Q
    ||||||| ||||||| |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||    
T  17053949 ttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggttt 17054048  T
Q  463 ttcgctcacagg 474  Q
    ||||||||||||    
T  17054049 ttcgctcacagg 17054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 311 - 477
Target Start/End: Complemental strand, 14057302 - 14057148
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| ||||||||||| |||||||  ||||||||||||||||||||| |||||| ||||||||||| |||| |||| ||||||| ||||         
T  14057302 gcaaagttca-aaagtggctgattaaggtcatcttcgcttaagcgacggctagctcgcttaagcgaccggctcacagaaagtctgggttccgctc----- 14057209  T
Q  411 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
          ||| ||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||    
T  14057208 ------gctgacggttcgcttgagcgaacttatggcagaatcaaaatggtttttcactcacgggttc 14057148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 311 - 477
Target Start/End: Original strand, 25111354 - 25111508
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| |||||||||||||| ||||  |||||||||||||||||| ||||||||| |||||||| || |||| |||| ||||||| ||||         
T  25111354 gcaaagttca-aaagtggctgactatggtcatcttcgcttaagcgacggccagttcgcttaagcgaccgactcacagaaagtctgggttccgctc----- 25111447  T
Q  411 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
          ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  25111448 ------gctgacggttcgcttgagcgaacttctggcagaatcaaaatggtttttcgcttacgggttc 25111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 24321327 - 24321216
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  |    
T  24321327 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 24321228  T
Q  444 gacagaatcaaa 455  Q
    | ||||||||||    
T  24321227 ggcagaatcaaa 24321216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 415
Target Start/End: Original strand, 18613531 - 18613691
Alignment:
Q  254 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 352  Q
    ||||| ||||||||||  | |||||  ||||||||| ||| |||||| | ||||| | |||||||||| |||||||| ||||||||||  ||||||||||    
T  18613531 ttatacaagttgaaaggaacatttttaaatgctcaagaggatcccct-agtgcacgaggcaaagttca-aaagtggccgactaaggtcatcttcgcttaa 18613628  T
Q  353 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    ||||||||| |||||||| ||||||| ||||||||  |||| |||||| ||||||| ||||||    
T  18613629 gcgacggctggttcgcttaagcgacctgcttacagagagttggggttccgctcgctaacggtt 18613691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 19902924 - 19902808
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||||||||||  || |||||  | | |||||||||||||| | |||||| ||||||    
T  19902924 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaatccagaacatacacaattatttataa 19902826  T
Q  118 ttatgcacatacatcaat 135  Q
    | ||||||||||||||||    
T  19902825 tcatgcacatacatcaat 19902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 23865615 - 23865732
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatat-gacttacaaccccacacttccaacaatccagaacatgcccaattaattata 116  Q
    ||||||||||||||||||||||||||||| | | ||||| |||||||| ||||||| || ||  |  || |||||| |||||||| | |||||| |||||    
T  23865615 aacctgtgtatatctacatacaactcaactaatgcatatatttcatattgacttactactccgtaactc-aacaattcagaacatacacaattatttata 23865713  T
Q  117 attatgcacatacatcaat 135  Q
    |||||||||||||||||||    
T  23865714 attatgcacatacatcaat 23865732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 19988050 - 19987990
Alignment:
Q  84 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 144  Q
    |||| ||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||    
T  19988050 tccaccaatccagaacatacacaattaattacaattatgctcatacatcaatttcattcaa 19987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 17053780 - 17053858
Alignment:
Q  20 acctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccaga 97  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||| || |||||  || |||||||||||    
T  17053780 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacatactactccacaactcaaacaatccaga 17053858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 21282245 - 21282298
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgt-ttcatatgacttacaac 75  Q
    |||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  21282245 tgtgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 21282298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 20005612 - 20005554
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  20005612 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttacaaccccaca 20005554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 22743893 - 22743947
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||||| || ||||| |   ||||||||||||||||    
T  22743893 tgtgtatatctacatacaactcaacaatgcatatatagaatatgacttacaaccc 22743947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 21669043 - 21669076
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatat 56  Q
    ||||||||| ||||||||||||||||||||||||    
T  21669043 tgtgtatatatacatacaactcaaccatacatat 21669076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 19988178 - 19988126
Alignment:
Q  24 gtgtatatctacatacaactcaaccatacatatg-tttcatatgacttacaac 75  Q
    |||||||||||||||||||| ||| || |||||| ||||||||| ||||||||    
T  19988178 gtgtatatctacatacaacttaacaatgcatatgttttcatatggcttacaac 19988126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 23825305 - 23825333
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  23825305 aacctgtgtatatctacatacaactcaac 23825333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 30766945 - 30766917
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  30766945 aacctgtgtatatctacatacaactcaac 30766917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 254 - 477
Target Start/End: Original strand, 665 - 888
Alignment:
Q  254 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 352  Q
    ||||| || |||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  665 ttatacaaattgaaagaaacattttttaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 763  T
Q  353 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatc 452  Q
    ||||||||| |||||||| ||||||||||||||||  |||| |||||   |||||| ||| || |||  |||||||||| |||||||||||||||||||     
T  764 gcgacggctggttcgcttaagcgaccggcttacagagagttggggtttccctcgctaacgtttcgcttgcggttcgcttaagcgaacttctgacagaatg 863  T
Q  453 aaaatggtttttcgctcacaggttc 477  Q
     ||||| ||||||||| || |||||    
T  864 gaaatgatttttcgcttacgggttc 888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 875 - 923
Alignment:
Q  404 tcgcttacggttt-gctcacggttcgcttgagcgaacttctgacagaat 451  Q
    |||||||||| || ||||||||||||||||||||| | |||||||||||    
T  875 tcgcttacgggttcgctcacggttcgcttgagcgagcgtctgacagaat 923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 474
Target Start/End: Original strand, 243 - 504
Alignment:
Q  192 actaacatcaaccaaattcgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaa 290  Q
    ||||||||||||||| |||||||| ||| | ||| ||||||| ||||| ||||||||||| | ||||| ||||||||||| ||||||||||||||||||     
T  243 actaacatcaaccaa-ttcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaag 341  T
Q  291 aggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaa 390  Q
    | |||||||   ||||| ||||||| ||||||||| ||||||||||||| ||||||||||||                    ||||| ||||||||| ||    
T  342 atgtcccct-tgtgcacgaagcaaaattcagaaagaggctgactaaggttcacttcgcttaa--------------------gcgactggcttacagaaa 420  T
Q  391 gtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    || ||||||| ||||||||| |||| | |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  421 gtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 474
Target Start/End: Original strand, 7388 - 7649
Alignment:
Q  192 actaacatcaaccaaattcgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaa 290  Q
    ||||||||||||||| |||||||| ||| | ||| ||||||| ||||| ||||||||||| | ||||| ||||||||||| ||||||||||||||||||     
T  7388 actaacatcaaccaa-ttcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaag 7486  T
Q  291 aggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaa 390  Q
    | |||||||   ||||| ||||||| ||||||||| ||||||||||||| ||||||||||||                    ||||| ||||||||| ||    
T  7487 atgtcccct-tgtgcacgaagcaaaattcagaaagaggctgactaaggttcacttcgcttaa--------------------gcgactggcttacagaaa 7565  T
Q  391 gtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 474  Q
    || ||||||| ||||||||| |||| | |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7566 gtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 260 - 477
Target Start/End: Original strand, 16086 - 16303
Alignment:
Q  260 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 358  Q
    ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||||||||    
T  16086 aagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacg 16184  T
Q  359 gctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatg 458  Q
    | ||| |||||| |||||||||||||||| ||||| |||||| ||||||| |||||| |||  ||||||| || ||||||||||||||| ||| ||| ||    
T  16185 gttagctcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttgcggttcggttaagcgaacttctgacataatgaaattg 16284  T
Q  459 gtttttcgctcacaggttc 477  Q
     ||||||||| || |||||    
T  16285 atttttcgcttacgggttc 16303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 279 - 471
Target Start/End: Complemental strand, 9358 - 9167
Alignment:
Q  279 agaatgctcaaaaggtcccctcaatgcacaaagcaaa-gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 377  Q
    ||||||||||| | ||||||||| ||||| ||| ||| ||| |||||  |||||||||||   ||||||||||||||||||||||| |||||| ||||||    
T  9358 agaatgctcaagaagtcccctca-tgcactaagtaaaagtttagaaaa-ggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgac 9261  T
Q  378 cggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    |  ||||||||| || ||||||||| ||||||| || | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  9260 caacttacagtaggtctgggttcagttcgcttatgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 9628 - 9512
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||||||||||  || |||||  | | ||||||||||||||   |||||| ||||||    
T  9628 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaatccagaacatatacaattatttataa 9530  T
Q  118 ttatgcacatacatcaat 135  Q
    | ||||||||||||||||    
T  9529 tcatgcacatacatcaat 9512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 240 - 415
Target Start/End: Original strand, 30195 - 30370
Alignment:
Q  240 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 338  Q
    ||||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||||||||    
T  30195 tacctatacaagggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccct-agtgcacgaagcaaaattcagaaagtggctgactaagg 30293  T
Q  339 tccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 415  Q
      |||||||||||||||| || | | |||||| |||||||||||||||| |||||| ||||  ||||||| ||||||    
T  30294 ctcacttcgcttaagcgaaggttggctcgcttaagcgaccggcttacagaaagtttaggtttcgctcgctcacggtt 30370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 7670 - 7557
Alignment:
Q  84 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctc 183  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||  || |||||| ||||||||||||||||||| |||||||    
T  7670 tccaacaacccagaacatacccaattaattataattatgctcatacatcaatttcattcaacatactatatattcacttgatttcatactcaatcatctc 7571  T
Q  184 caaaatttactaac 197  Q
    ||||||| ||||||    
T  7570 caaaattcactaac 7557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 7798 - 7730
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccacacttccaacaa 91  Q
    ||||||||||||||||||||| ||| || ||||||||||||||||||| |||| || || |||||||||    
T  7798 tgtgtatatctacatacaacttaacaatgcatatgtttcatatgacttgcaactccgcaattccaacaa 7730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 281 - 477
Target Start/End: Complemental strand, 766 - 581
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  766 aatgctcaaaaggatcccct-agtgcacgacgcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgaccg 668  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
    |||||||| ||||| |||||  ||||           ||| ||||||||||||||||||||||||||||||| ||| || ||||||||| || |||||    
T  667 gcttacagaaagttggggtttcgctc-----------gctgacggttcgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 378
Target Start/End: Complemental strand, 7702 - 7605
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgacc 378  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  7702 aatgctcaaaaggatcccct-agtgcacgacgcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 281 - 438
Target Start/End: Complemental strand, 4011 - 3854
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||||| || ||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  4011 aatgctcaaaagggtctcct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccg 3913  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaa 438  Q
    ||||||||| ||| ||||||| ||||  |||||||| |||  |||||||||| ||||||    
T  3912 gcttacagtgagtctgggttctgctcaattacggttcgcttgcggttcgcttaagcgaa 3854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 244 - 449
Target Start/End: Complemental strand, 19166 - 18961
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    ||||||| | ||||||||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  ||     
T  19166 tatacaaaggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccct 19068  T
Q  343 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttc 442  Q
    ||||||||| | ||||||| | ||| || |||||| |||| ||||  |||| |||||| ||||||| | || | ||||||||||||||| ||||||||||    
T  19067 cttcgcttaggagacggctggctcggttaagcgactggctcacagacagttggggttccgctcgctaatggctcgctcacggttcgcttaagcgaacttc 18968  T
Q  443 tgacaga 449  Q
    |||||||    
T  18967 tgacaga 18961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 244 - 449
Target Start/End: Original strand, 1117 - 1322
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  ||     
T  1117 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccct 1215  T
Q  343 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttc 442  Q
    ||||||||||||||||||| | |||||| ||||||||||| ||||  |||| || ||| ||||||| | || |   ||||||||||||| ||||||||||    
T  1216 cttcgcttaagcgacggctggctcgcttaagcgaccggctcacagagagttgggtttccgctcgctaatggctcaatcacggttcgcttaagcgaacttc 1315  T
Q  443 tgacaga 449  Q
    |||||||    
T  1316 tgacaga 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 131 - 450
Target Start/End: Complemental strand, 82082 - 81764
Alignment:
Q  131 tcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcatcagagcgttta-gt 229  Q
    |||| |||||||||  ||||||||| ||||||| |||||||||||  ||| ||||||||| |||||  |||||||| |||||  | ||  | ||||| ||    
T  82082 tcaagttcattcaacataatatatattcacttggtttcatactcaaacatatccaaaattcactaaattcaaccaa-ttcgactaccaatgtgtttaagt 81984  T
Q  230 agggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtgg 328  Q
    ||| ||| | | | ||||||||| ||||| ||||||||||| | |||||| ||||||||||||| | ||||   || || ||||||| |||| |||||||    
T  81983 aggattcag-tgcatatacaagggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctgg-tgtacgaagcaaaattcaaaaagtgg 81886  T
Q  329 ctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcg 428  Q
    |||||||||  | |||||||||||||||||||| | |||||| |||||||| |||||||  ||||  ||||  ||||||| || ||| ||| ||||||||    
T  81885 ctgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacagagagttgaggtttcgctcgctaacagttcgcttacggttcg 81786  T
Q  429 cttgagcgaacttctgacagaa 450  Q
    ||| |||||||||||| |||||    
T  81785 cttaagcgaacttctggcagaa 81764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 285 - 455
Target Start/End: Complemental strand, 80206 - 80036
Alignment:
Q  285 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggctta 384  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || |||||||||||||||||||| |||||| |||||||  ||||    
T  80206 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatctta 80107  T
Q  385 cagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 455  Q
    ||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  || ||||||||||    
T  80106 cagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggcagaatcaaa 80036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 110939 - 111378
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| || |||||  | | |||||||||||| | | |||||| ||||||    
T  110939 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactccacaact-cgacaatccagaacctacacaattatttataa 111037  T
Q  118 ttatgcacatacatcaatttcattc--aatgtaatat------ataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaatt 209  Q
    ||| ||||||||||||||  |||||   |||| ||||      ||| ||||||| |||||||| || |||||||||| ||||||||||| ||| | |||     
T  111038 ttacgcacatacatcaatcacattccacatgttatatatatacatattcacttgttttcatacacaatcatctccaacatttactaacaccaatc-aatc 111136  T
Q  210 cgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcaca 308  Q
    | |||| | |   ||| || |||| ||| | |||||| || ||| |||||  |||| || |||| ||| |||||||||||| | |||||||| ||||||     
T  111137 caatcaccggcttgttctaataggattcagttacctacaccagggttatactagttaaaggagaaattatagaatgctcaagaagtcccctc-atgcact 111235  T
Q  309 aagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgc 407  Q
    ||| || ||||||||||  |||||||||||   ||||||||||||                    ||||||  ||||||||| || ||||||||| ||||    
T  111236 aagtaatagttcagaaa-aggctgactaagactcacttcgcttaa--------------------gcgaccaacttacagtaggtatgggttcagttcgc 111314  T
Q  408 ttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    |||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  111315 ttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 91858 - 91747
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||| ||||||||      
T  91858 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaactttg 91759  T
Q  444 gacagaatcaaa 455  Q
    ||||||||||||    
T  91758 gacagaatcaaa 91747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 97584 - 97473
Alignment:
Q  344 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 443  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||| ||||||||      
T  97584 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaactttg 97485  T
Q  444 gacagaatcaaa 455  Q
    ||||||||||||    
T  97484 gacagaatcaaa 97473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 312 - 477
Target Start/End: Complemental strand, 35015 - 34861
Alignment:
Q  312 caaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttac 411  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||||| |||||  ||||| ||||          
T  35015 caaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttgaggttccgctc------ 34922  T
Q  412 ggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 477  Q
         ||| ||||||||||||||||||||||||||||||| ||| || ||||||||| || |||||    
T  34921 -----gctgacggttcgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 34861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 6876 - 6976
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| ||||||||||||| |||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||    
T  6876 gcaaagttca-aaagtggctgactgaggtcatcttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgctta 6974  T
Q  411 cg 412  Q
    ||    
T  6975 cg 6976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 372 - 471
Target Start/End: Complemental strand, 1442 - 1343
Alignment:
Q  372 agcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    ||||||| |||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  1442 agcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaattgtttttcgctcac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 281 - 415
Target Start/End: Complemental strand, 4329 - 4195
Alignment:
Q  281 aatgctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccgg 380  Q
    |||||||||||||| | |  ||||||| | |||| |||||  ||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||| | |    
T  4329 aatgctcaaaaggttctcctaatgcacgaggcaacgttcaagaagtgactgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgatcag 4230  T
Q  381 cttacagtaagtttgggttcagctcgcttacggtt 415  Q
    |||||||||||| ||||||| ||||| ||||||||    
T  4229 cttacagtaagtctgggttctgctcgattacggtt 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 18025 - 17972
Alignment:
Q  86 caacaatccagaacatgcccaattaattataattatgcacatacatcaatttca 139  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  18025 caacaatccagaacatacacaattaattataattatgctcatacatcaatttca 17972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 23658 - 23605
Alignment:
Q  86 caacaatccagaacatgcccaattaattataattatgcacatacatcaatttca 139  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  23658 caacaatccagaacatacacaattaattataattatgctcatacatcaatttca 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 254 - 415
Target Start/End: Original strand, 65414 - 65575
Alignment:
Q  254 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 352  Q
    ||||| ||||||||||| | |||||| |||| |||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  || |||||||    
T  65414 ttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccct-agtgcacgaggcaaaattcaaaaagtggctgactaaggtcttctccgcttaa 65512  T
Q  353 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    | ||||||| |||||||| ||||||||||||||||  |||| |||||| ||||||| ||||||    
T  65513 gtgacggctggttcgcttaagcgaccggcttacagagagttggggttccgctcgctaacggtt 65575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 322 - 449
Target Start/End: Original strand, 1445 - 1572
Alignment:
Q  322 aaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctca 421  Q
    ||||||||||||||||  |   ||||||||||||| |||| | |||||| ||||||||||| ||||  |||| |||||| |||||||   || | |||||    
T  1445 aaagtggctgactaagaccttgttcgcttaagcgaaggctggctcgcttaagcgaccggctgacagagagttggggttccgctcgctactggctcgctca 1544  T
Q  422 cggttcgcttgagcgaacttctgacaga 449  Q
    |||||||||| || ||||||||||||||    
T  1545 cggttcgcttaagtgaacttctgacaga 1572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 52380 - 52350
Alignment:
Q  19 aacctgtgtatatctacatacaactcaacca 49  Q
    |||||||||||||||||||||||||||||||    
T  52380 aacctgtgtatatctacatacaactcaacca 52350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 46975 - 46947
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  46975 aacctgtgtatatctacatacaactcaac 46947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 17497 - 17661
Alignment:
Q  275 ttttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgag 373  Q
    ||||||||||||||||||| || ||| | ||||| || |||| ||||||||||||||||| ||||  |||||||||||||||| |||| | |||||| ||    
T  17497 ttttagaatgctcaaaaggctcgcct-agtgcacgaaacaaaattcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgcttaag 17595  T
Q  374 cgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaac 439  Q
    |||||||||||||| |||||||||||  ||||||| || ||| |||  ||| || |||||||||||    
T  17596 cgaccggcttacagaaagtttgggtttcgctcgctcacagttcgcttgcgggtctcttgagcgaac 17661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 464
Target Start/End: Complemental strand, 23334 - 23192
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 410  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||  || ||||||| |||| ||||| ||||||| |||         
T  23334 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagctcgcttaggcaaccggctcacagaaagttggggttcaactc----- 23240  T
Q  411 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggttttt 464  Q
          ||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  23239 ------gctgacggttcgcttgagcgaacttctggcagaatgaaaatggttttt 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 464
Target Start/End: Complemental strand, 15647 - 15475
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  |||||||||||||| |||||| || ||| |||||| |    
T  15647 aatgctcaaaaggatcccct-agtgcacgaggcaaatttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagctcacttaagcgactg 15549  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggttttt 464  Q
    ||| |||| ||||| |||||| ||||           ||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  15548 gctcacagaaagttggggttccgctc-----------gctgacggttcgcttgagcgaacttctggcagaatgaaaatggttttt 15475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 477
Target Start/End: Original strand, 116183 - 116388
Alignment:
Q  262 gttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggc 360  Q
    ||||||||| | |||||| ||| ||||||||| |||||| | ||||| | |||||||||| ||| |||||||||||||||  ||||||||||||||||||    
T  116183 gttgaaagaaacattttaaaatactcaaaaggatcccct-agtgcacgaggcaaagttcaaaaaatggctgactaaggtcatcttcgcttaagcgacggc 116281  T
Q  361 tagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaat-caaaatgg 459  Q
    | |||||||| ||||||||||||||||  |||| || ||  ||||           ||| |||||||||||||||||||||||||||||||  ||||||     
T  116282 tggttcgcttaagcgaccggcttacagagagttgggatttcgctc-----------gctaacggttcgcttgagcgaacttctgacagaatgaaaaatga 116370  T
Q  460 tttttcgctcacaggttc 477  Q
    ||||||||| || |||||    
T  116371 tttttcgcttacgggttc 116388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 281 - 415
Target Start/End: Complemental strand, 129355 - 129221
Alignment:
Q  281 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 379  Q
    ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  |  ||||||||||||||||||| | |||||| ||||||||    
T  129355 aatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccttcttcgcttaagcgacggctggctcgcttaagcgaccg 129257  T
Q  380 gcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    ||| |||| ||||| |||||| ||||||| ||||||    
T  129256 gctcacagaaagttggggttccgctcgctaacggtt 129221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 254 - 449
Target Start/End: Original strand, 51554 - 51749
Alignment:
Q  254 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 352  Q
    ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||||||||||| |||| ||||||||||||||||  |  ||||||||||    
T  51554 ttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacaaagcaaaattcaaaaagtggctgactaagaccttcttcgcttaa 51652  T
Q  353 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacaga 449  Q
    ||||||||| | |||||| || |||| ||| | ||  ||||  ||||  ||||||| |||||| ||  ||||||||||| |||||||||||| ||||    
T  51653 gcgacggctggctcgcttaagtgaccagctcatagagagttgaggtttcgctcgctaacggttcgcatacggttcgcttaagcgaacttctggcaga 51749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 327 - 455
Target Start/End: Complemental strand, 4345 - 4217
Alignment:
Q  327 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggtt 426  Q
    |||||||||| |  || ||||||||||||| ||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |    
T  4345 ggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggct 4246  T
Q  427 cgcttgagcgaacttctgacagaatcaaa 455  Q
    ||||| |||||| |  || ||||||||||    
T  4245 cgcttaagcgaattcttggcagaatcaaa 4217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 244 - 449
Target Start/End: Original strand, 121200 - 121406
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||| |||||||  ||| ||||||||||||||||  |      
T  121200 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaagcaaaagtcaaaaagtggctgactaagacctt 121298  T
Q  343 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta-cggtttgctcacggttcgcttgagcgaactt 441  Q
    |||||||||||||| |||| | |||||| ||| ||||||||||||  |||| | |||| ||||||| |  |||| ||||||||||||||  |||||||||    
T  121299 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggggttcgctcacggttcgctcaagcgaactt 121398  T
Q  442 ctgacaga 449  Q
    ||| ||||    
T  121399 ctggcaga 121406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 244 - 449
Target Start/End: Original strand, 132077 - 132283
Alignment:
Q  244 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 342  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||| |||||||  ||| ||||||||||||||||  |      
T  132077 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaagcaaaagtcaaaaagtggctgactaagacctt 132175  T
Q  343 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta-cggtttgctcacggttcgcttgagcgaactt 441  Q
    |||||||||||||| |||| | |||||| ||| ||||||||||||  |||| | |||| ||||||| |  |||| ||||||||||||||  |||||||||    
T  132176 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggggttcgctcacggttcgctcaagcgaactt 132275  T
Q  442 ctgacaga 449  Q
    ||| ||||    
T  132276 ctggcaga 132283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 478
Target Start/End: Complemental strand, 15733 - 15521
Alignment:
Q  254 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 352  Q
    ||||| ||||||||||| | |||||  ||||||||||||| || ||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  15733 ttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcct-agtgcacgaggcaaagttca-aaagtggctgactaaggtcatcttcgcttaa 15636  T
Q  353 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatc 452  Q
    ||||||| | |||||||| |||||||| |||| ||  ||||||||||    ||       ||| ||| ||||||||||||||||||||||||||| |||     
T  15635 gcgacggttggttcgcttaagcgaccgtcttatagagagtttgggtt----tc-------gttcgctaacggttcgcttgagcgaacttctgacataatg 15547  T
Q  453 aaaatggtttttcgctcacaggttct 478  Q
     ||||| ||||||||| || ||||||    
T  15546 gaaatgatttttcgcttacgggttct 15521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 415
Target Start/End: Complemental strand, 102656 - 102503
Alignment:
Q  262 gttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggc 360  Q
    ||||||||| |  ||||| ||| ||||||||| |||||| | ||||| | |||| ||||| |||||||| ||||||||||  |||||||||||||| |||    
T  102656 gttgaaagaaaccttttaaaatactcaaaaggatcccct-agtgcacgaggcaaggttcaaaaagtggccgactaaggtcatcttcgcttaagcgatggc 102558  T
Q  361 tagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 415  Q
    | |||||||| |||||||| ||||||| ||||| |||||| ||||||| ||||||    
T  102557 tggttcgcttaagcgaccgacttacagaaagttggggttccgctcgctgacggtt 102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 455
Target Start/End: Original strand, 134867 - 134960
Alignment:
Q  362 agttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 455  Q
    ||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | ||||||||||||||| |||||| |  |||||||||||||    
T  134867 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttaagcgaattcttgacagaatcaaa 134960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 1716 - 1817
Alignment:
Q  260 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 358  Q
    ||||||||||| | |||||| ||||||||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  ||||||||||||||||    
T  1716 aagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaggcaaaattcaaaaagtggctgactaaggtcatcttcgcttaagcgacg 1814  T
Q  359 gct 361  Q
    |||    
T  1815 gct 1817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 311 - 408
Target Start/End: Complemental strand, 41267 - 41171
Alignment:
Q  311 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgct 408  Q
    |||||||||| |||||| ||||||||||||  |||||||||||||||| ||||||||||| ||||| ||||| |||| | ||| |||||| |||||||    
T  41267 gcaaagttca-aaagtgtctgactaaggtcatcttcgcttaagcgacgtctagttcgcttaagcgatcggctcacagaaggttggggttccgctcgct 41171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 1587 - 1527
Alignment:
Q  84 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 144  Q
    |||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||    
T  1587 tccaacaatccagaacatacacaattaattaaaattatgctcatacatcaatttcattcaa 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 1716 - 1663
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatg-tttcatatgacttacaac 75  Q
    ||||||||||||||||||||| ||| || |||||| ||||||||||||||||||    
T  1716 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaac 1663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 3107 - 3140
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatat 56  Q
    ||||||||||||||||||||||||||||||||||    
T  3107 tgtgtatatctacatacaactcaaccatacatat 3140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 174557 - 174440
Alignment:
Q  19 aacctgtgtatatctacatacaactcaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 117  Q
    ||||| ||||| ||||||||||| || || || |||||| ||||| |||||||||  | || ||  || ||||||||||||||| | |||||| ||||||    
T  174557 aacctttgtatctctacatacaattcgactattacatatttttcaaatgacttactgctccgcaactcaaacaatccagaacatacacaattatttataa 174458  T
Q  118 ttatgcacatacatcaat 135  Q
    ||||||||||||||||||    
T  174457 ttatgcacatacatcaat 174440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 439
Target Start/End: Complemental strand, 493786 - 493588
Alignment:
Q  242 cctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtc 340  Q
    ||||||||||  ||||| ||| | ||||| | |||| | ||| ||||||||| |||||| | ||||| |||||| |||||||||  ||||||||||||      
T  493786 cctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccct-agtgcacgaagcaaggttcagaaaaaggctgactaaggct 493688  T
Q  341 cacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgcttacggtttgctcacggttcgcttgagcgaac 439  Q
    || ||||||||||||| || ||| |||||| ||||||| ||  |||  | |||  |||||  ||||||| |||||| |||||| ||||||||||||||||    
T  493687 cagttcgcttaagcgaagggtagctcgcttaagcgaccagcacacaaaaggttgaggttctcgctcgctcacggttcgctcacagttcgcttgagcgaac 493588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 525142 - 525204
Alignment:
Q  325 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacag 387  Q
    ||||||||| |||| |  |||||||||||||| |||| |||||||| |||||||| |||||||    
T  525142 gtggctgaccaaggccttcttcgcttaagcgaaggctggttcgcttaagcgaccgtcttacag 525204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 440
Target Start/End: Complemental strand, 11700 - 11569
Alignment:
Q  309 aagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgc 407  Q
    |||||||||||||| || ||||||||||||  ||  |||||||||||| || |||||||||| ||||||| || ||||| |||||||| |||  ||||||    
T  11700 aagcaaagttcagatagaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgaccagc-tacaggaagtttggattctcgctcgc 11602  T
Q  408 ttacggtttgctcacggttcgcttgagcgaact 440  Q
    | |||| | |||  ||||||||| |||||||||    
T  11601 tcacggatcgcttgcggttcgctcgagcgaact 11569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 471
Target Start/End: Original strand, 49595 - 49645
Alignment:
Q  421 acggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 471  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  49595 acggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 49645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 152546 - 152599
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgt-ttcatatgacttacaac 75  Q
    |||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  152546 tgtgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 152599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 174557 - 174529
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  174557 aacctgtgtatatctacatacaactcaac 174529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 45691 - 45747
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaacccca 79  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||    
T  45691 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaacccca 45747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 6020 - 5969
Alignment:
Q  25 tgtatatctacatacaactcaaccatacatatgt-ttcatatgacttacaac 75  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  6020 tgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 5969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 13789 - 13847
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||| ||||| || ||||| | | ||||||||||||||||||||    
T  13789 tgtgtatatctacatacaaatcaacaatgcatatatataatatgacttacaaccccaca 13847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 42924 - 42870
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||    
T  42924 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 42870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1853 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1853
Description:

Target: scaffold1853; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 793 - 741
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaac 75  Q
    ||||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  793 tgtgtatatctacatacaactcaagaatgcatatgtataatatgacttacaac 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 24267 - 24192
Alignment:
Q  303 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgacc 378  Q
    ||||| ||||||||||||||||| | ||||||||||  ||  |||||||||||| || ||| |||||| |||||||    
T  24267 tgcacgaagcaaagttcagaaagagactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgacc 24192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 24106 - 24070
Alignment:
Q  403 ctcgcttacggtttgctcacggttcgcttgagcgaac 439  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  24106 ctcgcttacggttcgctcacggttcgcttaagcgaac 24070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 12616 - 12670
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    |||| |||||||||||||||||||| || ||||| | | ||||||||||||||||    
T  12616 tgtgaatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 12670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 20024 - 20082
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccccaca 81  Q
    ||||||||||||||||||||||||| || ||||| | | | |||||||||||| |||||    
T  20024 tgtgtatatctacatacaactcaacaatgcatatatataacatgacttacaactccaca 20082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 18164 - 18110
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatatgtttcatatgacttacaaccc 77  Q
    ||||||||||||||||||||||||| ||  |||| | | ||||||||||||||||    
T  18164 tgtgtatatctacatacaactcaacaatgaatatatataatatgacttacaaccc 18110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0266 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 23183 - 23216
Alignment:
Q  23 tgtgtatatctacatacaactcaaccatacatat 56  Q
    |||||||||||||||||||||||||||| |||||    
T  23183 tgtgtatatctacatacaactcaaccatgcatat 23216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 38582 - 38610
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  38582 aacctgtgtatatctacatacaactcaac 38610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 30141 - 30113
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  30141 aacctgtgtatatctacatacaactcaac 30113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 35542 - 35514
Alignment:
Q  19 aacctgtgtatatctacatacaactcaac 47  Q
    |||||||||||||||||||||||||||||    
T  35542 aacctgtgtatatctacatacaactcaac 35514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 664 times since January 2019
Visitors: 1282