View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0064_low_4 (Length: 447)
Name: NF0064_low_4
Description: NF0064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0064_low_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 20286460 - 20286047
Alignment:
| Q |
11 |
cagagaccggaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20286460 |
cagagaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
20286361 |
T |
|
| Q |
111 |
cgagccggtgccacataatggaggagaaacgacaatcccgaatgcaatgcataatggtttcttcgtcttctccacatctgaaacaggtggaagagggggc |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
20286360 |
cgagccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
20286261 |
T |
|
| Q |
211 |
catatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20286260 |
catatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatgaacagtttgaatttttcaggggactttagcttccatatc |
20286161 |
T |
|
| Q |
311 |
caagaccaagagtgggtagaaagcagattggtgtcagtatccgagttgcgaagtagccaagcatagccgcagtttgctgtgtataccccgttgatattgt |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20286160 |
caagaccaagagtgggtagaaagcggattggtgtcagtatccgagttgcgaagtagccaagcatagccgcagtttgctgtgtataccccgttgatattgt |
20286061 |
T |
|
| Q |
411 |
ggctccatatgatg |
424 |
Q |
| |
|
|||||||||||||| |
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|
| T |
20286060 |
ggctccatatgatg |
20286047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 11898759 - 11898346
Alignment:
| Q |
11 |
cagagaccggaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11898759 |
cagagaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
11898660 |
T |
|
| Q |
111 |
cgagccggtgccacataatggaggagaaacgacaatcccgaatgcaatgcataatggtttcttcgtcttctccacatctgaaacaggtggaagagggggc |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11898659 |
cgagccggtgccaaataatggaggagaaacgacaataccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
11898560 |
T |
|
| Q |
211 |
catatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11898559 |
catatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaataaacagtttgaatttttcaggggactttagcttccatatc |
11898460 |
T |
|
| Q |
311 |
caagaccaagagtgggtagaaagcagattggtgtcagtatccgagttgcgaagtagccaagcatagccgcagtttgctgtgtataccccgttgatattgt |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
11898459 |
caagaccaagagtgggtagaaagcggattggtgtcagtatccgagttgcgaagtagccaagcatagccgcagtttgctgtgtataccccgttgatattat |
11898360 |
T |
|
| Q |
411 |
ggctccatatgatg |
424 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11898359 |
ggctccatatgatg |
11898346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 119 - 430
Target Start/End: Original strand, 26431342 - 26431653
Alignment:
| Q |
119 |
tgccacataatggaggagaaacgacaatcccgaatgcaatgcataatggtttcttcgtcttctccacatctgaaacaggtggaagagggggccatatgac |
218 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||| || || || ||||| |||| |
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|
| T |
26431342 |
tgccaaatgatggaagagaaacgacagtcccgaaggcaatgcataatggtttcttcgtcttcgccacatcgcgaacaggttgaggaaggagccatctgac |
26431441 |
T |
|
| Q |
219 |
ggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatccaagacca |
318 |
Q |
| |
|
|||| | |||||| || | ||||||||| || || |||||||| |||||||||||||| ||||||||||| | || |||||||||||||||||||||||| |
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|
| T |
26431442 |
ggtggtggagaagtgataaagtcgggatcgcattgtggcaagccaaccaaatcaacagattgaatttttctgcggtctttagcttccatatccaagacca |
26431541 |
T |
|
| Q |
319 |
agagtgggtagaaagcagattggtgtcagtatccgagttgcgaagtagccaagcatagccgcagtttgctgtgtataccccgttgatattgtggctccat |
418 |
Q |
| |
|
| || |||||| | | | | || ||||||||||| ||||| ||||| || |||| | |||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
26431542 |
ggtgtaggtagatggtggggggatagcattatccgagttggaaagtaaccaagagtaaccgctggttgctgtgtaaaccccattgacattgtggctccat |
26431641 |
T |
|
| Q |
419 |
atgatgatgtcc |
430 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
26431642 |
atgatggtgtcc |
26431653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 23131121 - 23131534
Alignment:
| Q |
11 |
cagagaccggaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23131121 |
cagagaccagaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagctttatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
23131220 |
T |
|
| Q |
111 |
cgagccggtgccacataatggaggagaaacgacaatcccgaatgcaatgcataatggtttcttcgtcttctccacatctgaaacaggtggaagagggggc |
210 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23131221 |
cgagccggtgccaaataattgaggagaaatgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
23131320 |
T |
|
| Q |
211 |
catatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatc |
310 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23131321 |
catatgacggtgttcgaaaagagacattgtcggaatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccataac |
23131420 |
T |
|
| Q |
311 |
caagaccaagagtgggtagaaagcagattggtgtcagtatccgagttgcgaagtagccaagcatagccgcagtttgctgtgtataccccgttgatattgt |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23131421 |
caagaccaagagtgggtagaaagcggattggtgtcagtatccgagttgcgaagtagcccagcatagccgcagtttgctgtgtataccccgttgatattgt |
23131520 |
T |
|
| Q |
411 |
ggctccatatgatg |
424 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23131521 |
ggctccatatgatg |
23131534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 79 - 421
Target Start/End: Original strand, 14652284 - 14652626
Alignment:
| Q |
79 |
agcttcgttgaaaaaagcggtatccgtgaaaccgagccggtgccacataatggaggagaaacgacaatcccgaatgcaatgcataatggtttcttcgtct |
178 |
Q |
| |
|
|||||| |||| |||| || |||| || ||||||||| ||| ||| |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
14652284 |
agcttcattgagaaaaacgttatcagtaaaaccgagctggtaccaaataatggaggagaagcgacaatcccgaaggcaatgcattatggtttcttcgtct |
14652383 |
T |
|
| Q |
179 |
tctccacatctgaaacaggtggaagagggggccatatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtt |
278 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||||||| ||||||| ||||||||| | ||||||||| |||||||||||||| | |||||||||||||| |
|
|
| T |
14652384 |
tctccacatctcgaacaggtagaagagggagccatatgtcggtgttggagaagagatagagtcgggatcgcgttatggcaagccagccaaatcaacagtt |
14652483 |
T |
|
| Q |
279 |
tgaatttttcaggggactttagcttccatatccaagaccaagagtgggtagaaagcagattggtgtcagtatccgagttgcgaagtagccaagcatagcc |
378 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
14652484 |
tgaatttttcgggggattttagcttccatatccaagaccaagagtgggtagatggcgggttgatgtcagtatccgagttgcaaagtagccaagaatagcc |
14652583 |
T |
|
| Q |
379 |
gcagtttgctgtgtataccccgttgatattgtggctccatatg |
421 |
Q |
| |
|
|| |||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
14652584 |
gctgtttgctgtgtataccccattaatattgtgtctccatatg |
14652626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 53321339 - 53321255
Alignment:
| Q |
192 |
aacaggtggaagagggggccatatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacag |
276 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| | |||||| || | ||||||||| || || |||||||| | |||||||||||| |
|
|
| T |
53321339 |
aacaggtggaggagggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagccagccaaatcaacag |
53321255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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