View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0064_low_5 (Length: 433)
Name: NF0064_low_5
Description: NF0064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0064_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 54986129 - 54985732
Alignment:
| Q |
12 |
agagataatatggagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54986129 |
agagataatatggagagacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacat |
54986030 |
T |
|
| Q |
112 |
tggatatcatagcccccataaaccctgaaacgtagataagatcagtcaaacaaaatacagattcagcatccaatatcacctcaatctactatgatagaag |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
54986029 |
tggatatcatagcccccataaaccctgaaacatagataagatcagtcaaacaaaatacagattcagcatcctatatcaactcaatctactatgatagaag |
54985930 |
T |
|
| Q |
212 |
aacacaatcagcatctgaaaatcaaccatgt-----aaataagtgaatgtagtcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcac |
306 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985929 |
aacacaatcagcatctgaaaatcaaccatgtaaattaaataagtgaatgtagtcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcac |
54985830 |
T |
|
| Q |
307 |
aacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcaccaagcaagaatcttgatacaagaacactgaaagcaggttctcca |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54985829 |
aacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcaccaagcaagaattttgatacaagaacactgaaagcaggttctcca |
54985732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 7883625 - 7883510
Alignment:
| Q |
27 |
agacaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatagccc |
126 |
Q |
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||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||||| | |
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| T |
7883625 |
agacaagcataatagttcattccactaacactcattccattcattcctttctttgagaatatattcctaaatacaaatgccaaatttgatatcatagctc |
7883526 |
T |
|
| Q |
127 |
ccataaaccctgaaac |
142 |
Q |
| |
|
||||||| |||||||| |
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| T |
7883525 |
ccataaatcctgaaac |
7883510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 262 - 404
Target Start/End: Complemental strand, 7883437 - 7883295
Alignment:
| Q |
262 |
taccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcacc |
361 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| | | ||| ||||||||| | | |||||| ||||| || |
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|
| T |
7883437 |
taccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctcc |
7883338 |
T |
|
| Q |
362 |
aagcaagaatcttgatacaagaacactgaaagcaggttctcca |
404 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||| |
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|
| T |
7883337 |
aagcaagaatcttgatactagcacactgaaagctggttctcca |
7883295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 18396645 - 18396534
Alignment:
| Q |
29 |
acaagcatagtagttcattccactaacagacattcctttcattcccttctttgagaatatattcctaaacacaaaggccacattggatatcatagccccc |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| ||||| ||||| || ||||| || || | |||||||| |||| ||| ||||||||||||||| |
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|
| T |
18396645 |
acaagcatagtaattcattccactaacagactttcccttcatcccctttttcgagaagatgttgcggaacacaaatgccagatttgatatcatagccccc |
18396546 |
T |
|
| Q |
129 |
ataaaccctgaa |
140 |
Q |
| |
|
||||| |||||| |
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|
| T |
18396545 |
ataaaacctgaa |
18396534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 18396224 - 18396163
Alignment:
| Q |
261 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattgg |
322 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| |
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|
| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattgg |
18396163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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