View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0064_low_6 (Length: 307)

Name: NF0064_low_6
Description: NF0064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0064_low_6
NF0064_low_6
[»] chr8 (5 HSPs)
chr8 (32-307)||(23132657-23132932)
chr8 (32-199)||(14759722-14759889)
chr8 (32-199)||(26973253-26973420)
chr8 (32-262)||(26587024-26587254)
chr8 (32-104)||(38348267-38348339)
[»] chr3 (12 HSPs)
chr3 (32-307)||(11896948-11897223)
chr3 (32-307)||(26432770-26433045)
chr3 (45-259)||(23424311-23424525)
chr3 (36-256)||(11889865-11890085)
chr3 (32-259)||(17718481-17718708)
chr3 (32-259)||(19019710-19019937)
chr3 (32-259)||(38647305-38647532)
chr3 (45-259)||(53608423-53608637)
chr3 (36-117)||(49150035-49150116)
chr3 (32-172)||(15473656-15473795)
chr3 (33-103)||(3659894-3659964)
chr3 (32-101)||(55025080-55025149)
[»] chr1 (9 HSPs)
chr1 (32-298)||(20284649-20284915)
chr1 (32-255)||(31325079-31325302)
chr1 (32-259)||(50451695-50451922)
chr1 (32-259)||(50236688-50236915)
chr1 (32-259)||(43298158-43298385)
chr1 (40-262)||(10103800-10104022)
chr1 (32-117)||(1524767-1524852)
chr1 (32-118)||(23465137-23465224)
chr1 (207-259)||(5193219-5193271)
[»] chr2 (9 HSPs)
chr2 (32-307)||(14653752-14654027)
chr2 (32-259)||(35135342-35135569)
chr2 (32-259)||(40327975-40328202)
chr2 (32-259)||(19265213-19265440)
chr2 (45-258)||(573002-573215)
chr2 (32-199)||(16322246-16322413)
chr2 (32-181)||(177296-177445)
chr2 (32-199)||(42403400-42403567)
chr2 (33-103)||(39012328-39012398)
[»] chr5 (4 HSPs)
chr5 (32-259)||(7816932-7817159)
chr5 (45-117)||(23944828-23944900)
chr5 (32-259)||(6641139-6641366)
chr5 (32-116)||(23620887-23620971)
[»] chr4 (5 HSPs)
chr4 (32-259)||(54477530-54477758)
chr4 (32-259)||(3881512-3881742)
chr4 (45-117)||(33803788-33803860)
chr4 (32-116)||(48847971-48848055)
chr4 (32-116)||(46784742-46784826)
[»] chr6 (4 HSPs)
chr6 (32-259)||(11296925-11297152)
chr6 (45-259)||(24893962-24894176)
chr6 (32-245)||(35233286-35233499)
chr6 (32-259)||(32725587-32725814)
[»] scaffold0036 (1 HSPs)
scaffold0036 (32-259)||(75707-75932)
[»] chr7 (4 HSPs)
chr7 (45-262)||(23207989-23208206)
chr7 (36-256)||(27781759-27781979)
chr7 (32-113)||(16770233-16770314)
chr7 (32-116)||(1579428-1579512)
[»] scaffold0214 (1 HSPs)
scaffold0214 (32-109)||(8764-8841)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 32 - 307
Target Start/End: Complemental strand, 23132932 - 23132657
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132932 tattggtccctatcaaagcagctttctgcttggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 23132833  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132832 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 23132733  T
Q  232 acatcaccatcaagctcatcatgcattgcgtagcttctcatagttactctatactttggaacgggaacaagatgcc 307  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgcc 23132657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 14759722 - 14759889
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| ||||| |||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||||||| ||||||||||||| |   || |||| |    
T  14759722 tattggcccctaccaaagcagttttctgcctgggaggggcacttctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaag 14759821  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 199  Q
    |||||||| |  ||||||| |||  ||||| |||| |||||||| ||||| || |||||||| |||||    
T  14759822 aagaaggggtttgtagctttcaaaattgacctggaaaaagcttttgacaaagtaaactgggaattcct 14759889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 26973253 - 26973420
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| ||||| |||||||| ||||||||||| ||||||||  | |||||||| ||||||||||||||||| ||||||||||||| |   || |||| |    
T  26973253 tattggcccctaccaaagcagttttctgcctgggaggggcacctctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaag 26973352  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 199  Q
    |||||||| |  ||||||| ||| |||||| |||| |||||||| ||||| || |||||||| |||||    
T  26973353 aagaaggggtttgtagctttcaaacttgacctggaaaaagcttttgacaaagtaaactgggaattcct 26973420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 262
Target Start/End: Original strand, 26587024 - 26587254
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||||||||| |||| ||| |||||||| ||||||||||||   || |||||| |||||||||||||||||  ||| || |||| | | ||||| |||    
T  26587024 tattggtccctaccaaatcagttttctgccaggtaggggcacttatgacaactcttttgttttgcaggaaattgctcactttatgaggaaatctaagagg 26587123  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||| || || || |||| |||||||||  | |||||||| || ||||| || |||||||| || || |  |  || || |||||||| ||||||||      
T  26587124 aagaaaggctatgttgctttcaagcttgatcttgagaaagcatttgacaatgttaactgggagtttcttaatacttgtcttcatgatttcggatttcctg 26587223  T
Q  232 acatcaccatcaagctcatcatgcattgcgt 262  Q
    ||  | ||||||| |||||||||||||||||    
T  26587224 acgccgccatcaaactcatcatgcattgcgt 26587254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 38348267 - 38348339
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaatt 104  Q
    |||||| ||||||||||||||||| |||||||||||||| ||| | ||||| |||||| ||||||||||||||    
T  38348267 tattggcccctatcaaagcagcttcctgcctggtaggggaacttctgataattctattattttgcaggaaatt 38348339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 32 - 307
Target Start/End: Original strand, 11896948 - 11897223
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11896948 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 11897047  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11897048 aagaagggttacgtagcttacaagcttgacttggagaaagcttttgacaacgtcaactaggatttcctaagcaactgcctccatgattttggatttccga 11897147  T
Q  232 acatcaccatcaagctcatcatgcattgcgtagcttctcatagttactctatactttggaacgggaacaagatgcc 307  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgcc 11897223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 307
Target Start/End: Complemental strand, 26433045 - 26432770
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| |||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||   || || |||    
T  26433045 tattggcccctatcaaagcagtttcctgcctggtaggggtaccgcagataactctattgttttgcaggaaatttttcatttcatgaagagatcgaagagg 26432946  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    || ||||||| |||||||| |||||||||  | ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||      
T  26432945 aaaaagggtttcgtagctttcaagcttgatctagagaaagcttttgacaacgtcaactgggaatttctaagcaactgcctccatgattttgggtttccag 26432846  T
Q  232 acatcaccatcaagctcatcatgcattgcgtagcttc-tcatagttactctatactttggaacgggaacaagatgcc 307  Q
    ||||||||||||| |||||||||||||| ||  |||| ||| |  ||||||||||||||||| ||||||||| ||||    
T  26432845 acatcaccatcaaactcatcatgcattgtgtctcttcatca-aactactctatactttggaatgggaacaagttgcc 26432770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 259
Target Start/End: Original strand, 23424311 - 23424525
Alignment:
Q  45 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 144  Q
    |||||||| ||||||||| ||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| | | || || |||||||| ||||| |    
T  23424311 caaagcagatttctgcctagtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaagaggaagaaaggttatg 23424410  T
Q  145 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 244  Q
    | |||| |||||| |||||||||||||| ||||| || ||||  ||||||||||| |     ||||| || || ||||| |||||  |||||||||||||    
T  23424411 ttgctttcaagctagacttggagaaagcattcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaa 23424510  T
Q  245 gctcatcatgcattg 259  Q
    ||||||||| |||||    
T  23424511 gctcatcatacattg 23424525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 256
Target Start/End: Complemental strand, 11890085 - 11889865
Alignment:
Q  36 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaaga 135  Q
    |||||||| ||||||||||| ||||| ||||||||||| || || ||| |||||||||||||||||||| | || || ||| ||   ||||| | |||||    
T  11890085 ggtccctaccaaagcagcttcctgccaggtaggggcacggctgacaacactattgttttgcaggaaattgtacactttatgtagagatctaagaagaaga 11889986  T
Q  136 agggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacat 235  Q
    | || || ||||||| ||| |||||| | ||||||||||| || || ||||||||||||||| ||||    ||||||||||| ||||| || ||  | ||    
T  11889985 aaggctatgtagctttcaaacttgacctagagaaagcttttgataatgtcaactgggatttcttaagtgcttgcctccatgactttggtttcccagatat 11889886  T
Q  236 caccatcaagctcatcatgca 256  Q
     ||||| ||||||||||||||    
T  11889885 taccataaagctcatcatgca 11889865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 17718708 - 17718481
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| || || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||| |||||     ||||| | |    
T  17718708 tattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaag 17718609  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    || || ||||| || |||| |||||| ||| | |||||||| || || || ||||| |||||||| || | |   || || || |||||||| || |||     
T  17718608 aaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccgg 17718509  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    || |||||||||||||||||||||||||    
T  17718508 acgtcaccatcaagctcatcatgcattg 17718481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 19019937 - 19019710
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| || || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||| |||||     ||||| | |    
T  19019937 tattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaag 19019838  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    || || ||||| || |||| |||||| ||| | |||||||| || || || ||||| |||||||| || | |   || || || |||||||| || |||     
T  19019837 aaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccgg 19019738  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    || |||||||||||||||||||||||||    
T  19019737 acgtcaccatcaagctcatcatgcattg 19019710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 38647532 - 38647305
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| | |||||||||||  |||||||||||||| || ||  | ||||| || |||||||||||||||||| | ||||||||||   | || ||||      
T  38647532 tattggcctctatcaaagcatttttctgcctggtagaggaacatctgataattcaattgttttgcaggaaattgtacatttcatgagaaaatccaaaaat 38647433  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    || |||||||| ||| | | ||| |||||| |||| |||||||| || || ||||||||||| ||||| |     ||||| ||||||||||| |||||      
T  38647432 aaaaagggttatgtaacattcaaacttgacctggaaaaagcttttgataatgtcaactgggacttccttaattcttgcctgcatgattttggttttccag 38647333  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    ||||||||||||||||||||||||||||    
T  38647332 acatcaccatcaagctcatcatgcattg 38647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 259
Target Start/End: Complemental strand, 53608637 - 53608423
Alignment:
Q  45 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 144  Q
    |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||  |||||    || || | ||| || || || |    
T  53608637 caaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaattattcattatatgaaaagatcaaagaagaaaaaaggctatg 53608538  T
Q  145 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 244  Q
    | |||| |||||| ||  | ||||||||||| || || ||||| |||||||| || |     ||||| || |||||||| || ||  |||||||||||||    
T  53608537 tggctttcaagctcgatcttgagaaagcttttgataatgtcaattgggattttcttaatttttgcctacaggattttggtttcccagacatcaccatcaa 53608438  T
Q  245 gctcatcatgcattg 259  Q
    |||||||||||||||    
T  53608437 gctcatcatgcattg 53608423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 49150116 - 49150035
Alignment:
Q  36 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 117  Q
    ||||||||| | ||||| |||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  49150116 ggtccctattagagcagttttctgcctggtaggggcactaatgacaactcaattgttttgcaggaaattgttcatttcatga 49150035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 15473795 - 15473656
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| ||||||||||| || ||||||||||||| ||| ||| | |||||||| |||||||||||||||||| | ||||| |||||    || ||||||    
T  15473795 tattggcccctatcaaagtagttttctgcctggta-gggtacttctgataactcaattgttttgcaggaaattgtacattttatgaaaagatccaaaagg 15473697  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagc 172  Q
    || |||||||| || |||| || ||||||| |||| |||||    
T  15473696 aaaaagggttatgtggctttcaggcttgacctggaaaaagc 15473656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 3659964 - 3659894
Alignment:
Q  33 attggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaat 103  Q
    ||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||||    
T  3659964 attggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaat 3659894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 55025149 - 55025080
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaa 101  Q
    |||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||    
T  55025149 tattggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcaattgttttgcaggaa 55025080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 32 - 298
Target Start/End: Original strand, 20284649 - 20284915
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20284649 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaaacactctaaaagg 20284748  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20284749 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggattttctaagcaactgcctccatgattttggatttccga 20284848  T
Q  232 acatcaccatcaagctcatcatgcattgcgtagcttctcatagttactctatactttggaacgggaa 298  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaa 20284915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 255
Target Start/End: Complemental strand, 31325302 - 31325079
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| ||||| | |||||| ||||||||||||||||| ||| | |||||||| |||||||||||||||||| | || |||||||     || || | |    
T  31325302 tattggcccctaccgaagcagttttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattgtccacttcatgagaagatccaagaag 31325203  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||| || || ||||| ||||||||||| |     |||||||||||||| || |||||      
T  31325202 aagaagggttacgtagctttcaaacttgacctggagaaagcttttgataatgtcaattgggatttccttaattcttgcctccatgatttcggttttccag 31325103  T
Q  232 acatcaccatcaagctcatcatgc 255  Q
    ||||||| ||||||||||||||||    
T  31325102 acatcacaatcaagctcatcatgc 31325079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 50451695 - 50451922
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| || || |||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||| |||| | | ||||| | |    
T  50451695 tattggcccttaccaaagcagctttctgcctagtaggggaacttctgataactctattgttttgcaggaaattattcattttatgaggaagtctaagaag 50451794  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    || || ||||| || |||| |||||| || ||||| ||||| || || || ||||| |||||||| || |     ||||| ||||| ||||| ||||||     
T  50451795 aaaaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttggttttccgg 50451894  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    ||||||||||||| || |||||||||||    
T  50451895 acatcaccatcaaacttatcatgcattg 50451922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 50236915 - 50236688
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga-agcactctaaaag 130  Q
    ||||||||||||||||||||  ||||||||||||||||| ||  | |||||||| |||||||||||||||||| |||||||||||| |  | || |||||    
T  50236915 tattggtccctatcaaagcatttttctgcctggtaggggtacatctgataactcgattgttttgcaggaaattgttcatttcatgagaagattc-aaaag 50236817  T
Q  131 gaagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccg 230  Q
     |||||||| || |||||||  |||||||| ||||| || ||||| || || || || | ||| ||||| |     || |||||||||||||||||||||    
T  50236816 aaagaagggctatgtagcttttaagcttgatttggaaaaggcttttgataatgttaattaggacttcctcaattcttgtctccatgattttggatttccg 50236717  T
Q  231 aacatcaccatcaagctcatcatgcattg 259  Q
     ||||||||| ||| ||||||||||||||    
T  50236716 gacatcaccaccaaactcatcatgcattg 50236688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 43298158 - 43298385
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| || || |||||||| ||||||||| ||||||| ||| | |||||||| |||||||||||||||||  ||||||| ||||     ||||||| |    
T  43298158 tattggcccttaccaaagcagttttctgcctagtaggggaacttctgataactcaattgttttgcaggaaatagttcattttatgagaagatctaaaaag 43298257  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    |||||||| || ||||| | ||| |||||| || ||||||||||  | || ||||| |||||||| ||||     ||||||  ||||||||||||  |||    
T  43298258 aagaagggatatgtagccttcaaacttgacctgaagaaagcttttaataatgtcaaatgggattttctaaattcttgcctcattgattttggattctcga 43298357  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    |||||||||| ||||| |||||||||||    
T  43298358 acatcaccatgaagcttatcatgcattg 43298385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 262
Target Start/End: Complemental strand, 10104022 - 10103800
Alignment:
Q  40 cctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaaggg 139  Q
    |||||||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||||||| ||||||| | | | ||||| | |||||||||    
T  10104022 cctatcaaagtagctttctgcctggtaggggaacggctgataactcaattgttttgcaggaaattatttatttcataaggaaatctaagaagaagaaggg 10103923  T
Q  140 ttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcacc 239  Q
     || || |||| |||||| || || |||||| || | ||||| ||||  ||||| ||||| |     ||||| || || ||||||||| |  | ||||||    
T  10103922 ctatgttgctttcaagctcgatttagagaaaactattgacaatgtcagatgggacttccttaattcttgccttcaagagtttggattttcagatatcacc 10103823  T
Q  240 atcaagctcatcatgcattgcgt 262  Q
    ||||| || ||||||||||||||    
T  10103822 atcaaacttatcatgcattgcgt 10103800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 1524767 - 1524852
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 117  Q
    |||||| ||||||||||| || ||||||||||||||||| ||| | ||||| ||||||||||||||||||||| | || |||||||    
T  1524767 tattggcccctatcaaagtagttttctgcctggtaggggaacttctgataattctattgttttgcaggaaattgtccacttcatga 1524852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 23465137 - 23465224
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactc-tattgttttgcaggaaattattcatttcatgaa 118  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| | || ||||| | || ||||| |||||||| |||||||||||||    
T  23465137 tattggtccctatcagagcagttttctgcctggtaggggcactactgacaactcatttttttttggaggaaattgttcatttcatgaa 23465224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 5193271 - 5193219
Alignment:
Q  207 tgcctccatgattttggatttccgaacatcaccatcaagctcatcatgcattg 259  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  5193271 tgcctccttgattttggatttacgaacatcaccatcaagcttatcatgcattg 5193219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 32 - 307
Target Start/End: Complemental strand, 14654027 - 14653752
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||    
T  14654027 tattggtccctatcaaagcagttttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcgatctaagagg 14653928  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    |||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |    
T  14653927 aagaagggatacgtagctttcaagcttgatttggagaaagcattcgacaacgtcaactgggaattcctaaacaactgcctccatgattttggatttccta 14653828  T
Q  232 acatcaccatcaagctcatcatgcattgcgtagcttctcatagttactctatactttggaacgggaacaagatgcc 307  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||| ||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgcc 14653752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 35135569 - 35135342
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||| ||||||| |||||||| ||| ||||||||||||| ||  |||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  35135569 tattagtccctaccaaagcagttttttgcctggtaggggtacctcagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 35135470  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||||||||  ||||||| ||||||||| || ||||||||||| ||||||||||||||||| |||||  |||  |||||||| ||||| || || ||      
T  35135469 aagaagggttttgtagctttcaagcttgatttagagaaagcttttgacaacgtcaactgggacttccttcgcatttgcctccaggatttcggcttcccag 35135370  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    |||| |||||||| ||||||||||||||    
T  35135369 acattaccatcaaactcatcatgcattg 35135342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 40327975 - 40328202
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||||||||| ||||| || ||| | ||||||||||| ||  |||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  40327975 tattggtccctaccaaagtagtttttttcctggtaggggtacctcagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 40328074  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||||||||  ||||||| ||||||||| || ||||||||||| ||||||||||||||||| |||||  |||  |||||||| ||||| || || ||      
T  40328075 aagaagggttttgtagctttcaagcttgatttagagaaagcttttgacaacgtcaactgggaattccttcgcatttgcctccaggatttcggcttcccag 40328174  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    |||| |||||||| ||||||||||||||    
T  40328175 acattaccatcaaactcatcatgcattg 40328202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 19265213 - 19265440
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||||||||| |||||||  ||| ||||||||||||| ||   ||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  19265213 tattggtccctaccaaagcaattttttgcctggtaggggtacccaagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 19265312  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||||||||  || |||| ||||||||| || ||||||||||| ||||||||||||| ||| |||||  |||  |||||||| ||||| || || || |    
T  19265313 aagaagggttttgtggctttcaagcttgatttagagaaagcttttgacaacgtcaacttggacttccttcgcatttgcctccaggatttcggcttcccaa 19265412  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    |||| |||||||| ||||||||||||||    
T  19265413 acattaccatcaaactcatcatgcattg 19265440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 258
Target Start/End: Original strand, 573002 - 573215
Alignment:
Q  45 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 144  Q
    |||||||| ||||||| ||||||||  ||| | |||||||| |||||||||||||||||| ||||||||||||   | || |||| ||||||||| || |    
T  573002 caaagcagttttctgcatggtagggaaacttctgataactcaattgttttgcaggaaattgttcatttcatgagaaaatcaaaaaagaagaaggggtatg 573101  T
Q  145 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 244  Q
    | |||| |||||| |||||||| |||||||| |  || ||||  ||||||||||| |    |||||| ||||| |||||||||||  |||||||||||||    
T  573102 ttgctttcaagctcgacttggaaaaagcttttggtaatgtcagatgggatttccttaattcctgccttcatgagtttggatttccagacatcaccatcaa 573201  T
Q  245 gctcatcatgcatt 258  Q
     || ||||||||||    
T  573202 acttatcatgcatt 573215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 16322246 - 16322413
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||| ||| |||||||||||||| | ||||| ||||| |  || ||||||    
T  16322246 tattggcccctatcaaagtagctttctacctggtaggggtactgctgacaactcaattattttgcaggaaattttacattttatgaaacgatccaaaagg 16322345  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 199  Q
    || ||||| ||||| |||| |||||||||| |||| ||||| || || || || || |||||||||||    
T  16322346 aaaaagggctacgtggctttcaagcttgacctggaaaaagcgtttgataatgttaattgggatttcct 16322413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 177296 - 177445
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||||||||| |||||||| || ||||  |||||||||||| | || |||||||||||||||||||||||| ||||||| |||  |   || ||||||    
T  177296 tattggtccctaccaaagcagtttcctgcaaggtaggggcacttctgacaactctattgttttgcaggaaattgttcattttatgcggagatcaaaaagg 177395  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaa 181  Q
    || || |||||||| |||| ||| |||||  | ||||||||||| |||||    
T  177396 aaaaaaggttacgttgctttcaaacttgatcttgagaaagcttttgacaa 177445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 42403567 - 42403400
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| ||||  ||||| || ||||| ||||||||||| ||| | ||||| || |||||||||||||||||||| ||||| |||||    || ||||||    
T  42403567 tattggcccctgccaaagtagttttctacctggtaggggtacttctgataattcaattgttttgcaggaaattatacattttatgaaaagatccaaaagg 42403468  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 199  Q
    || |||||||| || || | |||||||||| |||| ||||| || || || ||||||||||| |||||    
T  42403467 aaaaagggttatgtggccttcaagcttgacctggaaaaagcgtttgataatgtcaactgggaattcct 42403400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 39012328 - 39012398
Alignment:
Q  33 attggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaat 103  Q
    ||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||||    
T  39012328 attggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaat 39012398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 7816932 - 7817159
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| || || |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||  |||||||||    
T  7816932 tattggcccttaccaaagcagttttctgcctggtaggggtacttcagataactctattgttttgcaggaaattttgcatttcatgaagcggtctaaaagg 7817031  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    |||||||| |  ||||| | ||| |||||| |||| |||||||||||||||||||| ||||||||||| ||    ||||||||||||||||| || ||      
T  7817032 aagaaggggtttgtagcattcaaacttgacctggaaaaagctttcgacaacgtcaattgggatttccttagttcgtgcctccatgattttggtttccctg 7817131  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    ||||||| ||||||||||||||||||||    
T  7817132 acatcacaatcaagctcatcatgcattg 7817159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 23944828 - 23944900
Alignment:
Q  45 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 117  Q
    |||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| |||||    
T  23944828 caaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatga 23944900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 6641366 - 6641139
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| ||||||||||| || ||||| ||| |||||||||||   |||||||| ||| |||||||||||||| | ||||| |||||    || |||||     
T  6641366 tattggcccctatcaaagtagttttctacctcgtaggggcacttatgataactcaattattttgcaggaaattgtccattttatgaaaagatccaaaaga 6641267  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    || ||||| || ||||||| |||||||||| |||| |||||||| || || || || ||| | ||||| | |   || |||||||| ||||| ||||||     
T  6641266 aaaaagggctatgtagctttcaagcttgacctggaaaaagcttttgataatgttaattggaagttcctcaactcttgtctccatgactttggttttccgg 6641167  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    | ||||| |||||||| |||||| ||||    
T  6641166 atatcacaatcaagcttatcatgtattg 6641139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 23620971 - 23620887
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 116  Q
    |||||||||||| |||||| | |||||||  ||||| ||||||   || |||||||||||||||||||||||| | |||||||||    
T  23620971 tattggtccctaccaaagcggttttctgcaaggtagaggcacttttgacaactctattgttttgcaggaaattgtccatttcatg 23620887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 54477758 - 54477530
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgtttt-gcaggaaattattcatttcatgaagcactctaaaag 130  Q
    |||||| ||||  |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| | |   || |||||    
T  54477758 tattggcccctgccaaagcagttttctgcctggaaggggcacttcagataactctattgtttttgcaggaaataattcatttcataaggagatccaaaag 54477659  T
Q  131 gaagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccg 230  Q
     ||||||||||| |||||||  |||||||| ||| | |||||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| |  || ||     
T  54477658 taagaagggttatgtagcttttaagcttgatttgaaaaaagcttttgacaatgtcaattgggaattccttagcaactgccttcatgatttcgagttccct 54477559  T
Q  231 aacatcaccatcaagctcatcatgcattg 259  Q
     ||||||||||||||||||||||||||||    
T  54477558 gacatcaccatcaagctcatcatgcattg 54477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 3881512 - 3881742
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| || || |||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||| | ||||| | |    
T  3881512 tattggcccttaccaaagcagttttctgcctggtaggggaacttctgataactctattgttttgcaggaaattattcattttatgaagaagtctaagaag 3881611  T
Q  132 aagaag---ggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttc 228  Q
    ||||||   ||||| || |||| |||||| || ||||| ||||| || || || ||||| |||||||| || |     ||||| ||||| ||||  ||||    
T  3881612 aagaagaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttgattttc 3881711  T
Q  229 cgaacatcaccatcaagctcatcatgcattg 259  Q
    ||  |||||||||||| || |||||||||||    
T  3881712 cggccatcaccatcaaacttatcatgcattg 3881742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 33803788 - 33803860
Alignment:
Q  45 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 117  Q
    |||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| |||||    
T  33803788 caaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatga 33803860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 48847971 - 48848055
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 116  Q
    |||||||| |||||||||||| |||||| |||||||||||||| | || ||| | ||||||||||||||||| | ||| ||||||    
T  48847971 tattggtctctatcaaagcagttttctgtctggtaggggcactactgacaacacaattgttttgcaggaaatcactcacttcatg 48848055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 46784826 - 46784742
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 116  Q
    |||||||||||| ||||| || ||||| || |||| ||||||  | || |||||||||||||||||||||||| |||| ||||||    
T  46784826 tattggtccctaccaaagtagttttctaccaggtaagggcacctctgacaactctattgttttgcaggaaattgttcacttcatg 46784742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 11297152 - 11296925
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    ||||||| ||||||||||||| |||||||||||||| || ||| | |||||||| ||||||||||| ||||| || || |||||||     |||||||||    
T  11297152 tattggttcctatcaaagcagttttctgcctggtagtggtacttctgataactcaattgttttgcacgaaatcatccacttcatgataagatctaaaagg 11297053  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| |||||||| || ||    | ||||||||||||||| || ||      
T  11297052 aagaagggttatgtcgctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccg 11296953  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    |||||||||| | |||||||||||||||    
T  11296952 acatcaccattatgctcatcatgcattg 11296925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 45 - 259
Target Start/End: Complemental strand, 24894176 - 24893962
Alignment:
Q  45 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 144  Q
    |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| | | || || |||||||| ||||| |    
T  24894176 caaagcagctttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaagaggaagaaaggttatg 24894077  T
Q  145 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 244  Q
    | |||| |||||| |||||||||||||||||||| || ||||  ||||||||||| |     ||||| || || ||||| |||||  |||||||||||||    
T  24894076 ttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaa 24893977  T
Q  245 gctcatcatgcattg 259  Q
    |||||||||||||||    
T  24893976 gctcatcatgcattg 24893962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 35233286 - 35233499
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| |||||||||||||| |||||| |||||||||||||  | || ||||| ||||||||| |||||||| |||| |||||||   | || |||| |    
T  35233286 tattggcccctatcaaagcagttttctgtctggtaggggcacctctgacaactcaattgttttgaaggaaattgttcacttcatgagaaaatccaaaaag 35233385  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    ||||| || || ||||||| ||| |||||  | ||||||||||| ||||| ||||||||||| || || || || ||||| ||||| || || || || |    
T  35233386 aagaaagggtatgtagctttcaaacttgatctagagaaagcttttgacaatgtcaactgggagtttcttagtaattgccttcatgacttcggtttcccta 35233485  T
Q  232 acatcaccatcaag 245  Q
    ||||||||||||||    
T  35233486 acatcaccatcaag 35233499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 32725814 - 32725587
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| || || |||||||| |||||||||  |||||| |||   || ||||| ||||||||| |||||||  |||| || ||||     ||||||| |    
T  32725814 tattggcccttaccaaagcagttttctgcctaataggggaacttatgacaactcaattgttttgtaggaaatagttcactttatgagaagatctaaaaag 32725715  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    |||||||| || ||||||| ||| |||||| ||||||||||||| || || ||||  |||||||| || |     ||||||| ||| ||||||||||||     
T  32725714 aagaagggatatgtagctttcaaacttgacctggagaaagcttttgataatgtcagatgggattttcttaattcttgcctccttgagtttggatttccgg 32725615  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    |||||||||||||||| |||||||||||    
T  32725614 acatcaccatcaagcttatcatgcattg 32725587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 75707 - 75932
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 131  Q
    |||||| ||||||||||| || | | ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||  || ||||||    
T  75707 tattggcccctatcaaagtagttgtttgcctggtaggggcacttcagataactttattgttttgcaggaaataattcacttcatgaagcgttccaaaagg 75806  T
Q  132 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 231  Q
    |||||||  |  ||||||| ||| |||||  ||  |||| |||| ||||||||||||| |||||| || |||| ||||||||||||||| || || |       
T  75807 aagaaggactttgtagctttcaaacttgatatg--gaaatcttttgacaacgtcaacttggattttcttagcatctgcctccatgatttcggcttcctag 75904  T
Q  232 acatcaccatcaagctcatcatgcattg 259  Q
    ||||||| |||||||||||  |||||||    
T  75905 acatcactatcaagctcattttgcattg 75932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 45 - 262
Target Start/End: Complemental strand, 23208206 - 23207989
Alignment:
Q  45 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 144  Q
    |||||||| |||||||| |||||||| ||| | || ||||| ||||||||||||||||||||||| || |||| | | || || |||||||| ||||| |    
T  23208206 caaagcagttttctgccaggtaggggaacttctgacaactcaattgttttgcaggaaattattcactttatgaggaagtcaaagaggaagaaaggttatg 23208107  T
Q  145 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 244  Q
    | |||| |||||| |||||||||||||||||||| || ||||  ||||||||||| |     |||||||| |||||||| |||||  | || ||||||||    
T  23208106 ttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgcctccaggattttggttttccagatattaccatcaa 23208007  T
Q  245 gctcatcatgcattgcgt 262  Q
     |||||||||||||||||    
T  23208006 actcatcatgcattgcgt 23207989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 256
Target Start/End: Complemental strand, 27781979 - 27781759
Alignment:
Q  36 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaaga 135  Q
    |||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||| |||||||| | || || |||  |   ||||| | |||||    
T  27781979 ggtccctatcaaagcagcttcctgccaggtaggggcacggctgacaactctattgttttgtaggaaattgtacactttatgcggagatctaagaagaaga 27781880  T
Q  136 agggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacat 235  Q
    | ||||  ||||||| ||| |||||| | ||||||||||| || || ||||| ||||||||| ||||    ||||| ||||| ||||| || ||  | ||    
T  27781879 aaggttgtgtagctttcaaacttgacctagagaaagcttttgataatgtcaattgggatttcttaagtgcttgccttcatgactttggtttcccagatat 27781780  T
Q  236 caccatcaagctcatcatgca 256  Q
     ||||| ||||||||||||||    
T  27781779 taccataaagctcatcatgca 27781759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 16770314 - 16770233
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttc 113  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||| | || ||||| |||||||||||||||||| ||||||||    
T  16770314 tattggtccttatcagagcagttttctgcctggtaggggcactactgacaactcaattgttttgcaggaaatttttcatttc 16770233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 1579512 - 1579428
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 116  Q
    ||||||||||||||||||||| ||||||||| |||||||| || | || ||||| ||||||||| ||||||| | ||| ||||||    
T  1579512 tattggtccctatcaaagcagttttctgcctagtaggggcgctactgacaactcaattgttttgaaggaaataactcacttcatg 1579428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 8764 - 8841
Alignment:
Q  32 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattca 109  Q
    ||||||||| || |||||||| || |||||||||||||||||  | || ||  | |||||||||||||||||||||||    
T  8764 tattggtccttaccaaagcagtttcctgcctggtaggggcaccactgacaatgccattgttttgcaggaaattattca 8841  T

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