View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0064_low_7 (Length: 297)

Name: NF0064_low_7
Description: NF0064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0064_low_7
NF0064_low_7
[»] chr8 (5 HSPs)
chr8 (22-297)||(23132657-23132932)
chr8 (22-189)||(14759722-14759889)
chr8 (22-189)||(26973253-26973420)
chr8 (22-252)||(26587024-26587254)
chr8 (22-94)||(38348267-38348339)
[»] chr3 (12 HSPs)
chr3 (22-297)||(11896948-11897223)
chr3 (22-297)||(26432770-26433045)
chr3 (35-249)||(23424311-23424525)
chr3 (26-246)||(11889865-11890085)
chr3 (22-249)||(17718481-17718708)
chr3 (22-249)||(19019710-19019937)
chr3 (22-249)||(38647305-38647532)
chr3 (35-249)||(53608423-53608637)
chr3 (26-107)||(49150035-49150116)
chr3 (22-162)||(15473656-15473795)
chr3 (23-93)||(3659894-3659964)
chr3 (22-91)||(55025080-55025149)
[»] chr1 (9 HSPs)
chr1 (22-288)||(20284649-20284915)
chr1 (22-245)||(31325079-31325302)
chr1 (22-249)||(50451695-50451922)
chr1 (22-249)||(50236688-50236915)
chr1 (22-249)||(43298158-43298385)
chr1 (30-252)||(10103800-10104022)
chr1 (22-107)||(1524767-1524852)
chr1 (22-108)||(23465137-23465224)
chr1 (197-249)||(5193219-5193271)
[»] chr2 (9 HSPs)
chr2 (22-297)||(14653752-14654027)
chr2 (22-249)||(35135342-35135569)
chr2 (22-249)||(40327975-40328202)
chr2 (22-249)||(19265213-19265440)
chr2 (35-248)||(573002-573215)
chr2 (22-189)||(16322246-16322413)
chr2 (22-171)||(177296-177445)
chr2 (22-189)||(42403400-42403567)
chr2 (23-93)||(39012328-39012398)
[»] chr5 (4 HSPs)
chr5 (22-249)||(7816932-7817159)
chr5 (35-107)||(23944828-23944900)
chr5 (22-249)||(6641139-6641366)
chr5 (22-106)||(23620887-23620971)
[»] chr4 (5 HSPs)
chr4 (22-249)||(54477530-54477758)
chr4 (22-249)||(3881512-3881742)
chr4 (35-107)||(33803788-33803860)
chr4 (22-106)||(48847971-48848055)
chr4 (22-106)||(46784742-46784826)
[»] chr6 (4 HSPs)
chr6 (22-249)||(11296925-11297152)
chr6 (35-249)||(24893962-24894176)
chr6 (22-235)||(35233286-35233499)
chr6 (22-249)||(32725587-32725814)
[»] scaffold0036 (1 HSPs)
scaffold0036 (22-249)||(75707-75932)
[»] chr7 (4 HSPs)
chr7 (35-252)||(23207989-23208206)
chr7 (26-246)||(27781759-27781979)
chr7 (22-103)||(16770233-16770314)
chr7 (22-106)||(1579428-1579512)
[»] scaffold0214 (1 HSPs)
scaffold0214 (22-99)||(8764-8841)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 23132932 - 23132657
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132932 tattggtccctatcaaagcagctttctgcttggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 23132833  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132832 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 23132733  T
Q  222 acatcaccatcaagctcatcatgcattgcgtagcttctcatagttactctatactttggaacgggaacaagatgcc 297  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgcc 23132657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 14759722 - 14759889
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| ||||| |||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||||||| ||||||||||||| |   || |||| |    
T  14759722 tattggcccctaccaaagcagttttctgcctgggaggggcacttctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaag 14759821  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 189  Q
    |||||||| |  ||||||| |||  ||||| |||| |||||||| ||||| || |||||||| |||||    
T  14759822 aagaaggggtttgtagctttcaaaattgacctggaaaaagcttttgacaaagtaaactgggaattcct 14759889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 26973253 - 26973420
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| ||||| |||||||| ||||||||||| ||||||||  | |||||||| ||||||||||||||||| ||||||||||||| |   || |||| |    
T  26973253 tattggcccctaccaaagcagttttctgcctgggaggggcacctctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaag 26973352  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 189  Q
    |||||||| |  ||||||| ||| |||||| |||| |||||||| ||||| || |||||||| |||||    
T  26973353 aagaaggggtttgtagctttcaaacttgacctggaaaaagcttttgacaaagtaaactgggaattcct 26973420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 26587024 - 26587254
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||||||||| |||| ||| |||||||| ||||||||||||   || |||||| |||||||||||||||||  ||| || |||| | | ||||| |||    
T  26587024 tattggtccctaccaaatcagttttctgccaggtaggggcacttatgacaactcttttgttttgcaggaaattgctcactttatgaggaaatctaagagg 26587123  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||| || || || |||| |||||||||  | |||||||| || ||||| || |||||||| || || |  |  || || |||||||| ||||||||      
T  26587124 aagaaaggctatgttgctttcaagcttgatcttgagaaagcatttgacaatgttaactgggagtttcttaatacttgtcttcatgatttcggatttcctg 26587223  T
Q  222 acatcaccatcaagctcatcatgcattgcgt 252  Q
    ||  | ||||||| |||||||||||||||||    
T  26587224 acgccgccatcaaactcatcatgcattgcgt 26587254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 38348267 - 38348339
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaatt 94  Q
    |||||| ||||||||||||||||| |||||||||||||| ||| | ||||| |||||| ||||||||||||||    
T  38348267 tattggcccctatcaaagcagcttcctgcctggtaggggaacttctgataattctattattttgcaggaaatt 38348339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 11896948 - 11897223
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11896948 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 11897047  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11897048 aagaagggttacgtagcttacaagcttgacttggagaaagcttttgacaacgtcaactaggatttcctaagcaactgcctccatgattttggatttccga 11897147  T
Q  222 acatcaccatcaagctcatcatgcattgcgtagcttctcatagttactctatactttggaacgggaacaagatgcc 297  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgcc 11897223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 26433045 - 26432770
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| |||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||   || || |||    
T  26433045 tattggcccctatcaaagcagtttcctgcctggtaggggtaccgcagataactctattgttttgcaggaaatttttcatttcatgaagagatcgaagagg 26432946  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    || ||||||| |||||||| |||||||||  | ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||      
T  26432945 aaaaagggtttcgtagctttcaagcttgatctagagaaagcttttgacaacgtcaactgggaatttctaagcaactgcctccatgattttgggtttccag 26432846  T
Q  222 acatcaccatcaagctcatcatgcattgcgtagcttc-tcatagttactctatactttggaacgggaacaagatgcc 297  Q
    ||||||||||||| |||||||||||||| ||  |||| ||| |  ||||||||||||||||| ||||||||| ||||    
T  26432845 acatcaccatcaaactcatcatgcattgtgtctcttcatca-aactactctatactttggaatgggaacaagttgcc 26432770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 23424311 - 23424525
Alignment:
Q  35 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 134  Q
    |||||||| ||||||||| ||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| | | || || |||||||| ||||| |    
T  23424311 caaagcagatttctgcctagtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaagaggaagaaaggttatg 23424410  T
Q  135 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 234  Q
    | |||| |||||| |||||||||||||| ||||| || ||||  ||||||||||| |     ||||| || || ||||| |||||  |||||||||||||    
T  23424411 ttgctttcaagctagacttggagaaagcattcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaa 23424510  T
Q  235 gctcatcatgcattg 249  Q
    ||||||||| |||||    
T  23424511 gctcatcatacattg 23424525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 11890085 - 11889865
Alignment:
Q  26 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaaga 125  Q
    |||||||| ||||||||||| ||||| ||||||||||| || || ||| |||||||||||||||||||| | || || ||| ||   ||||| | |||||    
T  11890085 ggtccctaccaaagcagcttcctgccaggtaggggcacggctgacaacactattgttttgcaggaaattgtacactttatgtagagatctaagaagaaga 11889986  T
Q  126 agggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacat 225  Q
    | || || ||||||| ||| |||||| | ||||||||||| || || ||||||||||||||| ||||    ||||||||||| ||||| || ||  | ||    
T  11889985 aaggctatgtagctttcaaacttgacctagagaaagcttttgataatgtcaactgggatttcttaagtgcttgcctccatgactttggtttcccagatat 11889886  T
Q  226 caccatcaagctcatcatgca 246  Q
     ||||| ||||||||||||||    
T  11889885 taccataaagctcatcatgca 11889865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 17718708 - 17718481
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| || || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||| |||||     ||||| | |    
T  17718708 tattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaag 17718609  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    || || ||||| || |||| |||||| ||| | |||||||| || || || ||||| |||||||| || | |   || || || |||||||| || |||     
T  17718608 aaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccgg 17718509  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    || |||||||||||||||||||||||||    
T  17718508 acgtcaccatcaagctcatcatgcattg 17718481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 19019937 - 19019710
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| || || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||| |||||     ||||| | |    
T  19019937 tattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaag 19019838  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    || || ||||| || |||| |||||| ||| | |||||||| || || || ||||| |||||||| || | |   || || || |||||||| || |||     
T  19019837 aaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccgg 19019738  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    || |||||||||||||||||||||||||    
T  19019737 acgtcaccatcaagctcatcatgcattg 19019710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 38647532 - 38647305
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| | |||||||||||  |||||||||||||| || ||  | ||||| || |||||||||||||||||| | ||||||||||   | || ||||      
T  38647532 tattggcctctatcaaagcatttttctgcctggtagaggaacatctgataattcaattgttttgcaggaaattgtacatttcatgagaaaatccaaaaat 38647433  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    || |||||||| ||| | | ||| |||||| |||| |||||||| || || ||||||||||| ||||| |     ||||| ||||||||||| |||||      
T  38647432 aaaaagggttatgtaacattcaaacttgacctggaaaaagcttttgataatgtcaactgggacttccttaattcttgcctgcatgattttggttttccag 38647333  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    ||||||||||||||||||||||||||||    
T  38647332 acatcaccatcaagctcatcatgcattg 38647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 249
Target Start/End: Complemental strand, 53608637 - 53608423
Alignment:
Q  35 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 134  Q
    |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||  |||||    || || | ||| || || || |    
T  53608637 caaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaattattcattatatgaaaagatcaaagaagaaaaaaggctatg 53608538  T
Q  135 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 234  Q
    | |||| |||||| ||  | ||||||||||| || || ||||| |||||||| || |     ||||| || |||||||| || ||  |||||||||||||    
T  53608537 tggctttcaagctcgatcttgagaaagcttttgataatgtcaattgggattttcttaatttttgcctacaggattttggtttcccagacatcaccatcaa 53608438  T
Q  235 gctcatcatgcattg 249  Q
    |||||||||||||||    
T  53608437 gctcatcatgcattg 53608423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 49150116 - 49150035
Alignment:
Q  26 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 107  Q
    ||||||||| | ||||| |||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  49150116 ggtccctattagagcagttttctgcctggtaggggcactaatgacaactcaattgttttgcaggaaattgttcatttcatga 49150035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 15473795 - 15473656
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| ||||||||||| || ||||||||||||| ||| ||| | |||||||| |||||||||||||||||| | ||||| |||||    || ||||||    
T  15473795 tattggcccctatcaaagtagttttctgcctggta-gggtacttctgataactcaattgttttgcaggaaattgtacattttatgaaaagatccaaaagg 15473697  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagc 162  Q
    || |||||||| || |||| || ||||||| |||| |||||    
T  15473696 aaaaagggttatgtggctttcaggcttgacctggaaaaagc 15473656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 3659964 - 3659894
Alignment:
Q  23 attggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaat 93  Q
    ||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||||    
T  3659964 attggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaat 3659894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 55025149 - 55025080
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaa 91  Q
    |||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||    
T  55025149 tattggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcaattgttttgcaggaa 55025080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 20284649 - 20284915
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20284649 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaaacactctaaaagg 20284748  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20284749 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggattttctaagcaactgcctccatgattttggatttccga 20284848  T
Q  222 acatcaccatcaagctcatcatgcattgcgtagcttctcatagttactctatactttggaacgggaa 288  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaa 20284915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 31325302 - 31325079
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| ||||| | |||||| ||||||||||||||||| ||| | |||||||| |||||||||||||||||| | || |||||||     || || | |    
T  31325302 tattggcccctaccgaagcagttttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattgtccacttcatgagaagatccaagaag 31325203  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||| || || ||||| ||||||||||| |     |||||||||||||| || |||||      
T  31325202 aagaagggttacgtagctttcaaacttgacctggagaaagcttttgataatgtcaattgggatttccttaattcttgcctccatgatttcggttttccag 31325103  T
Q  222 acatcaccatcaagctcatcatgc 245  Q
    ||||||| ||||||||||||||||    
T  31325102 acatcacaatcaagctcatcatgc 31325079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 50451695 - 50451922
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| || || |||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||| |||| | | ||||| | |    
T  50451695 tattggcccttaccaaagcagctttctgcctagtaggggaacttctgataactctattgttttgcaggaaattattcattttatgaggaagtctaagaag 50451794  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    || || ||||| || |||| |||||| || ||||| ||||| || || || ||||| |||||||| || |     ||||| ||||| ||||| ||||||     
T  50451795 aaaaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttggttttccgg 50451894  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    ||||||||||||| || |||||||||||    
T  50451895 acatcaccatcaaacttatcatgcattg 50451922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 50236915 - 50236688
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga-agcactctaaaag 120  Q
    ||||||||||||||||||||  ||||||||||||||||| ||  | |||||||| |||||||||||||||||| |||||||||||| |  | || |||||    
T  50236915 tattggtccctatcaaagcatttttctgcctggtaggggtacatctgataactcgattgttttgcaggaaattgttcatttcatgagaagattc-aaaag 50236817  T
Q  121 gaagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccg 220  Q
     |||||||| || |||||||  |||||||| ||||| || ||||| || || || || | ||| ||||| |     || |||||||||||||||||||||    
T  50236816 aaagaagggctatgtagcttttaagcttgatttggaaaaggcttttgataatgttaattaggacttcctcaattcttgtctccatgattttggatttccg 50236717  T
Q  221 aacatcaccatcaagctcatcatgcattg 249  Q
     ||||||||| ||| ||||||||||||||    
T  50236716 gacatcaccaccaaactcatcatgcattg 50236688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 43298158 - 43298385
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| || || |||||||| ||||||||| ||||||| ||| | |||||||| |||||||||||||||||  ||||||| ||||     ||||||| |    
T  43298158 tattggcccttaccaaagcagttttctgcctagtaggggaacttctgataactcaattgttttgcaggaaatagttcattttatgagaagatctaaaaag 43298257  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    |||||||| || ||||| | ||| |||||| || ||||||||||  | || ||||| |||||||| ||||     ||||||  ||||||||||||  |||    
T  43298258 aagaagggatatgtagccttcaaacttgacctgaagaaagcttttaataatgtcaaatgggattttctaaattcttgcctcattgattttggattctcga 43298357  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    |||||||||| ||||| |||||||||||    
T  43298358 acatcaccatgaagcttatcatgcattg 43298385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 10104022 - 10103800
Alignment:
Q  30 cctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaaggg 129  Q
    |||||||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||||||| ||||||| | | | ||||| | |||||||||    
T  10104022 cctatcaaagtagctttctgcctggtaggggaacggctgataactcaattgttttgcaggaaattatttatttcataaggaaatctaagaagaagaaggg 10103923  T
Q  130 ttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcacc 229  Q
     || || |||| |||||| || || |||||| || | ||||| ||||  ||||| ||||| |     ||||| || || ||||||||| |  | ||||||    
T  10103922 ctatgttgctttcaagctcgatttagagaaaactattgacaatgtcagatgggacttccttaattcttgccttcaagagtttggattttcagatatcacc 10103823  T
Q  230 atcaagctcatcatgcattgcgt 252  Q
    ||||| || ||||||||||||||    
T  10103822 atcaaacttatcatgcattgcgt 10103800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 1524767 - 1524852
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 107  Q
    |||||| ||||||||||| || ||||||||||||||||| ||| | ||||| ||||||||||||||||||||| | || |||||||    
T  1524767 tattggcccctatcaaagtagttttctgcctggtaggggaacttctgataattctattgttttgcaggaaattgtccacttcatga 1524852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 23465137 - 23465224
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactc-tattgttttgcaggaaattattcatttcatgaa 108  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| | || ||||| | || ||||| |||||||| |||||||||||||    
T  23465137 tattggtccctatcagagcagttttctgcctggtaggggcactactgacaactcatttttttttggaggaaattgttcatttcatgaa 23465224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 5193271 - 5193219
Alignment:
Q  197 tgcctccatgattttggatttccgaacatcaccatcaagctcatcatgcattg 249  Q
    ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  5193271 tgcctccttgattttggatttacgaacatcaccatcaagcttatcatgcattg 5193219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 14654027 - 14653752
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||    
T  14654027 tattggtccctatcaaagcagttttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcgatctaagagg 14653928  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    |||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |    
T  14653927 aagaagggatacgtagctttcaagcttgatttggagaaagcattcgacaacgtcaactgggaattcctaaacaactgcctccatgattttggatttccta 14653828  T
Q  222 acatcaccatcaagctcatcatgcattgcgtagcttctcatagttactctatactttggaacgggaacaagatgcc 297  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||| ||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgcc 14653752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 35135569 - 35135342
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||| ||||||| |||||||| ||| ||||||||||||| ||  |||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  35135569 tattagtccctaccaaagcagttttttgcctggtaggggtacctcagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 35135470  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||||||||  ||||||| ||||||||| || ||||||||||| ||||||||||||||||| |||||  |||  |||||||| ||||| || || ||      
T  35135469 aagaagggttttgtagctttcaagcttgatttagagaaagcttttgacaacgtcaactgggacttccttcgcatttgcctccaggatttcggcttcccag 35135370  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    |||| |||||||| ||||||||||||||    
T  35135369 acattaccatcaaactcatcatgcattg 35135342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 40327975 - 40328202
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||||||||| ||||| || ||| | ||||||||||| ||  |||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  40327975 tattggtccctaccaaagtagtttttttcctggtaggggtacctcagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 40328074  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||||||||  ||||||| ||||||||| || ||||||||||| ||||||||||||||||| |||||  |||  |||||||| ||||| || || ||      
T  40328075 aagaagggttttgtagctttcaagcttgatttagagaaagcttttgacaacgtcaactgggaattccttcgcatttgcctccaggatttcggcttcccag 40328174  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    |||| |||||||| ||||||||||||||    
T  40328175 acattaccatcaaactcatcatgcattg 40328202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 19265213 - 19265440
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||||||||| |||||||  ||| ||||||||||||| ||   ||| ||||| ||||||||||||||||| || || || ||||||| ||||||||||    
T  19265213 tattggtccctaccaaagcaattttttgcctggtaggggtacccaagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg 19265312  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||||||||  || |||| ||||||||| || ||||||||||| ||||||||||||| ||| |||||  |||  |||||||| ||||| || || || |    
T  19265313 aagaagggttttgtggctttcaagcttgatttagagaaagcttttgacaacgtcaacttggacttccttcgcatttgcctccaggatttcggcttcccaa 19265412  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    |||| |||||||| ||||||||||||||    
T  19265413 acattaccatcaaactcatcatgcattg 19265440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 248
Target Start/End: Original strand, 573002 - 573215
Alignment:
Q  35 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 134  Q
    |||||||| ||||||| ||||||||  ||| | |||||||| |||||||||||||||||| ||||||||||||   | || |||| ||||||||| || |    
T  573002 caaagcagttttctgcatggtagggaaacttctgataactcaattgttttgcaggaaattgttcatttcatgagaaaatcaaaaaagaagaaggggtatg 573101  T
Q  135 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 234  Q
    | |||| |||||| |||||||| |||||||| |  || ||||  ||||||||||| |    |||||| ||||| |||||||||||  |||||||||||||    
T  573102 ttgctttcaagctcgacttggaaaaagcttttggtaatgtcagatgggatttccttaattcctgccttcatgagtttggatttccagacatcaccatcaa 573201  T
Q  235 gctcatcatgcatt 248  Q
     || ||||||||||    
T  573202 acttatcatgcatt 573215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 16322246 - 16322413
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||| ||| |||||||||||||| | ||||| ||||| |  || ||||||    
T  16322246 tattggcccctatcaaagtagctttctacctggtaggggtactgctgacaactcaattattttgcaggaaattttacattttatgaaacgatccaaaagg 16322345  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 189  Q
    || ||||| ||||| |||| |||||||||| |||| ||||| || || || || || |||||||||||    
T  16322346 aaaaagggctacgtggctttcaagcttgacctggaaaaagcgtttgataatgttaattgggatttcct 16322413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 177296 - 177445
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||||||||| |||||||| || ||||  |||||||||||| | || |||||||||||||||||||||||| ||||||| |||  |   || ||||||    
T  177296 tattggtccctaccaaagcagtttcctgcaaggtaggggcacttctgacaactctattgttttgcaggaaattgttcattttatgcggagatcaaaaagg 177395  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaa 171  Q
    || || |||||||| |||| ||| |||||  | ||||||||||| |||||    
T  177396 aaaaaaggttacgttgctttcaaacttgatcttgagaaagcttttgacaa 177445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 42403567 - 42403400
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| ||||  ||||| || ||||| ||||||||||| ||| | ||||| || |||||||||||||||||||| ||||| |||||    || ||||||    
T  42403567 tattggcccctgccaaagtagttttctacctggtaggggtacttctgataattcaattgttttgcaggaaattatacattttatgaaaagatccaaaagg 42403468  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct 189  Q
    || |||||||| || || | |||||||||| |||| ||||| || || || ||||||||||| |||||    
T  42403467 aaaaagggttatgtggccttcaagcttgacctggaaaaagcgtttgataatgtcaactgggaattcct 42403400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 39012328 - 39012398
Alignment:
Q  23 attggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaat 93  Q
    ||||| ||||||||||| || ||||| ||||||||||||||  | || || || |||||||||||||||||    
T  39012328 attggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaat 39012398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 7816932 - 7817159
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| || || |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||  |||||||||    
T  7816932 tattggcccttaccaaagcagttttctgcctggtaggggtacttcagataactctattgttttgcaggaaattttgcatttcatgaagcggtctaaaagg 7817031  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    |||||||| |  ||||| | ||| |||||| |||| |||||||||||||||||||| ||||||||||| ||    ||||||||||||||||| || ||      
T  7817032 aagaaggggtttgtagcattcaaacttgacctggaaaaagctttcgacaacgtcaattgggatttccttagttcgtgcctccatgattttggtttccctg 7817131  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    ||||||| ||||||||||||||||||||    
T  7817132 acatcacaatcaagctcatcatgcattg 7817159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 23944828 - 23944900
Alignment:
Q  35 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 107  Q
    |||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| |||||    
T  23944828 caaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatga 23944900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 6641366 - 6641139
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| ||||||||||| || ||||| ||| |||||||||||   |||||||| ||| |||||||||||||| | ||||| |||||    || |||||     
T  6641366 tattggcccctatcaaagtagttttctacctcgtaggggcacttatgataactcaattattttgcaggaaattgtccattttatgaaaagatccaaaaga 6641267  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    || ||||| || ||||||| |||||||||| |||| |||||||| || || || || ||| | ||||| | |   || |||||||| ||||| ||||||     
T  6641266 aaaaagggctatgtagctttcaagcttgacctggaaaaagcttttgataatgttaattggaagttcctcaactcttgtctccatgactttggttttccgg 6641167  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    | ||||| |||||||| |||||| ||||    
T  6641166 atatcacaatcaagcttatcatgtattg 6641139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 23620971 - 23620887
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 106  Q
    |||||||||||| |||||| | |||||||  ||||| ||||||   || |||||||||||||||||||||||| | |||||||||    
T  23620971 tattggtccctaccaaagcggttttctgcaaggtagaggcacttttgacaactctattgttttgcaggaaattgtccatttcatg 23620887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 54477758 - 54477530
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgtttt-gcaggaaattattcatttcatgaagcactctaaaag 120  Q
    |||||| ||||  |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| | |   || |||||    
T  54477758 tattggcccctgccaaagcagttttctgcctggaaggggcacttcagataactctattgtttttgcaggaaataattcatttcataaggagatccaaaag 54477659  T
Q  121 gaagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccg 220  Q
     ||||||||||| |||||||  |||||||| ||| | |||||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| |  || ||     
T  54477658 taagaagggttatgtagcttttaagcttgatttgaaaaaagcttttgacaatgtcaattgggaattccttagcaactgccttcatgatttcgagttccct 54477559  T
Q  221 aacatcaccatcaagctcatcatgcattg 249  Q
     ||||||||||||||||||||||||||||    
T  54477558 gacatcaccatcaagctcatcatgcattg 54477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 3881512 - 3881742
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| || || |||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||| | ||||| | |    
T  3881512 tattggcccttaccaaagcagttttctgcctggtaggggaacttctgataactctattgttttgcaggaaattattcattttatgaagaagtctaagaag 3881611  T
Q  122 aagaag---ggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttc 218  Q
    ||||||   ||||| || |||| |||||| || ||||| ||||| || || || ||||| |||||||| || |     ||||| ||||| ||||  ||||    
T  3881612 aagaagaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttgattttc 3881711  T
Q  219 cgaacatcaccatcaagctcatcatgcattg 249  Q
    ||  |||||||||||| || |||||||||||    
T  3881712 cggccatcaccatcaaacttatcatgcattg 3881742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 33803788 - 33803860
Alignment:
Q  35 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga 107  Q
    |||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| |||||    
T  33803788 caaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatga 33803860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 48847971 - 48848055
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 106  Q
    |||||||| |||||||||||| |||||| |||||||||||||| | || ||| | ||||||||||||||||| | ||| ||||||    
T  48847971 tattggtctctatcaaagcagttttctgtctggtaggggcactactgacaacacaattgttttgcaggaaatcactcacttcatg 48848055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 46784826 - 46784742
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 106  Q
    |||||||||||| ||||| || ||||| || |||| ||||||  | || |||||||||||||||||||||||| |||| ||||||    
T  46784826 tattggtccctaccaaagtagttttctaccaggtaagggcacctctgacaactctattgttttgcaggaaattgttcacttcatg 46784742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 11297152 - 11296925
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    ||||||| ||||||||||||| |||||||||||||| || ||| | |||||||| ||||||||||| ||||| || || |||||||     |||||||||    
T  11297152 tattggttcctatcaaagcagttttctgcctggtagtggtacttctgataactcaattgttttgcacgaaatcatccacttcatgataagatctaaaagg 11297053  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| |||||||| || ||    | ||||||||||||||| || ||      
T  11297052 aagaagggttatgtcgctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccg 11296953  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    |||||||||| | |||||||||||||||    
T  11296952 acatcaccattatgctcatcatgcattg 11296925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 35 - 249
Target Start/End: Complemental strand, 24894176 - 24893962
Alignment:
Q  35 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 134  Q
    |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| | | || || |||||||| ||||| |    
T  24894176 caaagcagctttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaagaggaagaaaggttatg 24894077  T
Q  135 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 234  Q
    | |||| |||||| |||||||||||||||||||| || ||||  ||||||||||| |     ||||| || || ||||| |||||  |||||||||||||    
T  24894076 ttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaa 24893977  T
Q  235 gctcatcatgcattg 249  Q
    |||||||||||||||    
T  24893976 gctcatcatgcattg 24893962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 35233286 - 35233499
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| |||||||||||||| |||||| |||||||||||||  | || ||||| ||||||||| |||||||| |||| |||||||   | || |||| |    
T  35233286 tattggcccctatcaaagcagttttctgtctggtaggggcacctctgacaactcaattgttttgaaggaaattgttcacttcatgagaaaatccaaaaag 35233385  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    ||||| || || ||||||| ||| |||||  | ||||||||||| ||||| ||||||||||| || || || || ||||| ||||| || || || || |    
T  35233386 aagaaagggtatgtagctttcaaacttgatctagagaaagcttttgacaatgtcaactgggagtttcttagtaattgccttcatgacttcggtttcccta 35233485  T
Q  222 acatcaccatcaag 235  Q
    ||||||||||||||    
T  35233486 acatcaccatcaag 35233499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 32725814 - 32725587
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| || || |||||||| |||||||||  |||||| |||   || ||||| ||||||||| |||||||  |||| || ||||     ||||||| |    
T  32725814 tattggcccttaccaaagcagttttctgcctaataggggaacttatgacaactcaattgttttgtaggaaatagttcactttatgagaagatctaaaaag 32725715  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    |||||||| || ||||||| ||| |||||| ||||||||||||| || || ||||  |||||||| || |     ||||||| ||| ||||||||||||     
T  32725714 aagaagggatatgtagctttcaaacttgacctggagaaagcttttgataatgtcagatgggattttcttaattcttgcctccttgagtttggatttccgg 32725615  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    |||||||||||||||| |||||||||||    
T  32725614 acatcaccatcaagcttatcatgcattg 32725587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 75707 - 75932
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg 121  Q
    |||||| ||||||||||| || | | ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||  || ||||||    
T  75707 tattggcccctatcaaagtagttgtttgcctggtaggggcacttcagataactttattgttttgcaggaaataattcacttcatgaagcgttccaaaagg 75806  T
Q  122 aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga 221  Q
    |||||||  |  ||||||| ||| |||||  ||  |||| |||| ||||||||||||| |||||| || |||| ||||||||||||||| || || |       
T  75807 aagaaggactttgtagctttcaaacttgatatg--gaaatcttttgacaacgtcaacttggattttcttagcatctgcctccatgatttcggcttcctag 75904  T
Q  222 acatcaccatcaagctcatcatgcattg 249  Q
    ||||||| |||||||||||  |||||||    
T  75905 acatcactatcaagctcattttgcattg 75932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 252
Target Start/End: Complemental strand, 23208206 - 23207989
Alignment:
Q  35 caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg 134  Q
    |||||||| |||||||| |||||||| ||| | || ||||| ||||||||||||||||||||||| || |||| | | || || |||||||| ||||| |    
T  23208206 caaagcagttttctgccaggtaggggaacttctgacaactcaattgttttgcaggaaattattcactttatgaggaagtcaaagaggaagaaaggttatg 23208107  T
Q  135 tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa 234  Q
    | |||| |||||| |||||||||||||||||||| || ||||  ||||||||||| |     |||||||| |||||||| |||||  | || ||||||||    
T  23208106 ttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgcctccaggattttggttttccagatattaccatcaa 23208007  T
Q  235 gctcatcatgcattgcgt 252  Q
     |||||||||||||||||    
T  23208006 actcatcatgcattgcgt 23207989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 27781979 - 27781759
Alignment:
Q  26 ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaaga 125  Q
    |||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||| |||||||| | || || |||  |   ||||| | |||||    
T  27781979 ggtccctatcaaagcagcttcctgccaggtaggggcacggctgacaactctattgttttgtaggaaattgtacactttatgcggagatctaagaagaaga 27781880  T
Q  126 agggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacat 225  Q
    | ||||  ||||||| ||| |||||| | ||||||||||| || || ||||| ||||||||| ||||    ||||| ||||| ||||| || ||  | ||    
T  27781879 aaggttgtgtagctttcaaacttgacctagagaaagcttttgataatgtcaattgggatttcttaagtgcttgccttcatgactttggtttcccagatat 27781780  T
Q  226 caccatcaagctcatcatgca 246  Q
     ||||| ||||||||||||||    
T  27781779 taccataaagctcatcatgca 27781759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 16770314 - 16770233
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttc 103  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||| | || ||||| |||||||||||||||||| ||||||||    
T  16770314 tattggtccttatcagagcagttttctgcctggtaggggcactactgacaactcaattgttttgcaggaaatttttcatttc 16770233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 1579512 - 1579428
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg 106  Q
    ||||||||||||||||||||| ||||||||| |||||||| || | || ||||| ||||||||| ||||||| | ||| ||||||    
T  1579512 tattggtccctatcaaagcagttttctgcctagtaggggcgctactgacaactcaattgttttgaaggaaataactcacttcatg 1579428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 8764 - 8841
Alignment:
Q  22 tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattca 99  Q
    ||||||||| || |||||||| || |||||||||||||||||  | || ||  | |||||||||||||||||||||||    
T  8764 tattggtccttaccaaagcagtttcctgcctggtaggggcaccactgacaatgccattgttttgcaggaaattattca 8841  T

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