View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0066-INSERTION-1 (Length: 545)

Name: NF0066-INSERTION-1
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0066-INSERTION-1
NF0066-INSERTION-1
[»] chr7 (31 HSPs)
chr7 (22-231)||(20300665-20300870)
chr7 (247-524)||(20063074-20063342)
chr7 (407-540)||(20302949-20303082)
chr7 (404-484)||(20168792-20168872)
chr7 (409-491)||(20273103-20273185)
chr7 (409-491)||(20283417-20283499)
chr7 (247-317)||(20294110-20294180)
chr7 (247-345)||(20303148-20303246)
chr7 (247-318)||(20283587-20283658)
chr7 (247-484)||(20230863-20231100)
chr7 (246-347)||(20278981-20279082)
chr7 (404-484)||(20242825-20242905)
chr7 (404-484)||(20293894-20293974)
chr7 (407-489)||(20288537-20288619)
chr7 (96-212)||(20063532-20063648)
chr7 (247-318)||(20273299-20273370)
chr7 (409-492)||(20278837-20278920)
chr7 (407-492)||(20006033-20006118)
chr7 (250-318)||(20168632-20168700)
chr7 (247-318)||(20242994-20243065)
chr7 (247-318)||(20263484-20263555)
chr7 (247-323)||(20089748-20089824)
chr7 (404-484)||(20263318-20263398)
chr7 (259-313)||(19938522-19938576)
chr7 (259-313)||(19969661-19969715)
chr7 (112-205)||(20230617-20230710)
chr7 (100-212)||(20302752-20302864)
chr7 (413-492)||(19938344-19938423)
chr7 (413-492)||(19969483-19969562)
chr7 (408-491)||(20089910-20089993)
chr7 (118-175)||(20278536-20278593)
[»] chr4 (1 HSPs)
chr4 (407-489)||(40824515-40824597)
[»] chr8 (2 HSPs)
chr8 (450-487)||(4131414-4131451)
chr8 (451-487)||(4151864-4151900)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 4e-64; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 20300870 - 20300665
Alignment:
Q  22 ttccacctttattaaatagtaggaaagctttattattaaatcgagcgaaaaacataatttgagctgagctataatatattacntgagttttttgatgtcc 121  Q
    |||||||||||||||||||||| ||||||||||||   |||| || ||||||||||||||||||| | || |  |||||||| |||||||||||| ||||    
T  20300870 ttccacctttattaaatagtagaaaagctttatta---aatcaagtgaaaaacataatttgagctcatctctggtatattacctgagttttttgaagtcc 20300774  T
Q  122 ttctccaaatgatatatgcacaaaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttatttctccctctatcctgtatata 221  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||||| |||    
T  20300773 ttctccacatgatatatgcacaaaggacaattacgagagttcctactatcacttctattgtaatgatgattgttttgtttctccctctat-ctgtaaata 20300675  T
Q  222 gggaaaattt 231  Q
    ||||||||||    
T  20300674 gggaaaattt 20300665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 247 - 524
Target Start/End: Original strand, 20063074 - 20063342
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttctcctgaaataaaatagtaagagacaaca 346  Q
    ||||| || |||||||| |||||||||| ||||||||||||||| ||||||||   |||||||||||||||| ||||||| | |||| ||||  ||||||    
T  20063074 aattcttctagcccttggccagatgctcgagaaagtcttttaactgctatttctcgaccatcttgcagtttcccctgaaagataataataagtaacaaca 20063173  T
Q  347 aactactatagacattggtttatgacacttttgcatttacagtaccttgtatacgggacgggaccaaaaccaccctgtccaagtttggtggacatgtgga 446  Q
    |    ||||||||| ||||||  |  | ||||| ||||||||||||||||| || |||| |     ||||||||||||||||||||| |||||| |||||    
T  20063174 a----ctatagacaatggtttcaggaatttttgtatttacagtaccttgtacacaggaccg-----aaaccaccctgtccaagtttgttggacaagtgga 20063264  T
Q  447 agttgtttgtggcagttgcaagcttttcaaaatcaaatagtaatagtttctgttgtttaacttcggatagtccaccaa 524  Q
    | ||||||||||||||||||||||||||||||||||||| |||||| |  ||| || |||||||||||| ||| ||||    
T  20063265 aattgtttgtggcagttgcaagcttttcaaaatcaaataataatagctcttgtagtctaacttcggataatcctccaa 20063342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 407 - 540
Target Start/End: Complemental strand, 20303082 - 20302949
Alignment:
Q  407 ggaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaatagtttctgttgtttaa 506  Q
    ||||| ||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||| | |||||||||| ||| || | |||| ||||||    
T  20303082 ggaccgaaaccaccctcgccaagtttgttggacaagtggaagttgtttgtggcagttgcaagctttccgaaatcaaatactaacagctcctgtagtttaa 20302983  T
Q  507 cttcggatagtccaccaattatatcatcactatt 540  Q
    ||| ||| | ||| ||||||  ||||||||||||    
T  20302982 cttgggaaaatcctccaattgcatcatcactatt 20302949  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 20168792 - 20168872
Alignment:
Q  404 acgggaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaat 484  Q
    ||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||||| |||||||||||||||    
T  20168792 acgggaccaaaaccaccttgtccaagtttgttggaaaagtggaagttgtttgtggcagttgcaagtttttcaaaatcaaat 20168872  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 20273185 - 20273103
Alignment:
Q  409 accaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaata 491  Q
    ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| || ||||||||||||| |||||    
T  20273185 accaaaaccaccctgtccaagtttgttggacaagtggaagttgttagtggcagttgcaagtttctcaaaatcaaatattaata 20273103  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 491
Target Start/End: Complemental strand, 20283499 - 20283417
Alignment:
Q  409 accaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaata 491  Q
    |||||||||||||| |||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  20283499 accaaaaccaccctatccaagtttgttggataagtggaagttgtttgtggcagttgcaatcttttcaaaatcaaatattaata 20283417  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 20294180 - 20294110
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagttt 317  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  20294180 aattcctccaacccttgtccagatgctctagaaagtcttttaactgctatttcctgaccatcttgcagttt 20294110  T

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Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 20303246 - 20303148
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttctcctgaaataaaatagtaagagacaac 345  Q
    |||||||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||  |||| || |||||  |||||||||||    
T  20303246 aattcctccaacccttgtccagacgctctagaaagtcttttaactgctatttcctgaccatcttgcagttttccctggaagaaaattataagagacaac 20303148  T

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Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 20283658 - 20283587
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttc 318  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  20283658 aattcctccagaccttgtccagatgctcttgaaagtcttttaactgctatttcctgaccatcttgcagtttc 20283587  T

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Target: chr7; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 247 - 484
Target Start/End: Complemental strand, 20231100 - 20230863
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttctcctgaaataaaatagtaagagacaaca 346  Q
    |||||||||| |||||||||||||||||||||||| |||||||  ||||||||   |||||||||||||||| |||  || |||||| || | |||||||    
T  20231100 aattcctccaacccttgtccagatgctctagaaagccttttaattgctatttctcgaccatcttgcagtttcccctagaagaaaatattatgtgacaaca 20231001  T
Q  347 aactactatagacattggttt---------atgacacttttgcatttacagtaccttgtatacgggacgggaccaaaaccaccctgtccaagtttggtgg 437  Q
    |     |||| ||| ||||||         || ||  | |||||||||  ||||||| ||||||||||     ||||||||||||||||||||||| | |    
T  20231000 at----tatacacaatggttttaaagtattataactttgttgcatttaaggtaccttatatacgggac-----caaaaccaccctgtccaagtttgttag 20230910  T
Q  438 acatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaat 484  Q
    ||| ||  ||||||||||||||||||||||  |||||||||||||||    
T  20230909 acaggtcaaagttgtttgtggcagttgcaactttttcaaaatcaaat 20230863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 246 - 347
Target Start/End: Complemental strand, 20279082 - 20278981
Alignment:
Q  246 aaattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttctcctgaaataaaatagtaagagacaac 345  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||||| |||  || |||||| || | ||||||    
T  20279082 aaattcctccaacccttgtccggatgctctagaaagtcttttaactgctatttcctggccatcttgcagtttcccctagaaaaaaatattatgtgacaac 20278983  T
Q  346 aa 347  Q
    ||    
T  20278982 aa 20278981  T

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Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 20242905 - 20242825
Alignment:
Q  404 acgggaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaat 484  Q
    |||||||||||||||||||||||||||||| | |||| ||  ||||||||||||||||||||||  |||||||||||||||    
T  20242905 acgggaccaaaaccaccctgtccaagtttgtttgacaggtcaaagttgtttgtggcagttgcaactttttcaaaatcaaat 20242825  T

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Target: chr7; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 20293974 - 20293894
Alignment:
Q  404 acgggaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaat 484  Q
    |||||||||||||||||||||||||||||| |||| | ||| |||||||||||||| | |||||| |||||||||||||||    
T  20293974 acgggaccaaaaccaccctgtccaagtttgttggaaaagtgaaagttgtttgtggcggctgcaagtttttcaaaatcaaat 20293894  T

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Target: chr7; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 407 - 489
Target Start/End: Complemental strand, 20288619 - 20288537
Alignment:
Q  407 ggaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaa 489  Q
    |||||||||||||| || ||||||||  |||||  ||||||||||||||||||| |||||||| |||||||||||||||||||    
T  20288619 ggaccaaaaccaccttgcccaagtttattggacgagtggaagttgtttgtggcaattgcaagcctttcaaaatcaaatagtaa 20288537  T

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Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 20063532 - 20063648
Alignment:
Q  96 tatattacntgagttttttgatgtccttctccaaatgatatatgcacaaaggacaattacaagagttcctattatcactgctattgtaatgatgattgtt 195  Q
    |||||||| |||| | ||||| || |||||||| |||||||||||||||| |  |||||  ||||||||||||||||| |   |||||||||||| ||||    
T  20063532 tatattacttgagctgtttgaagttcttctccacatgatatatgcacaaatggaaattatgagagttcctattatcaccgaagttgtaatgatgactgtt 20063631  T
Q  196 ttatttctccctctatc 212  Q
    ||||||| |||||||||    
T  20063632 ttatttccccctctatc 20063648  T

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Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 20273370 - 20273299
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttc 318  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||||   ||||||||||||||||    
T  20273370 aattcctccaacccttgtccagatgctttagaaagtcttttaactgctatttctcgaccatcttgcagtttc 20273299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 409 - 492
Target Start/End: Complemental strand, 20278920 - 20278837
Alignment:
Q  409 accaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaatag 492  Q
    ||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||| |  || ||||||||||||| ||||||    
T  20278920 accaaaaccaccctgtccaagtttgttggataagtggaagttgttagtggcagttgccaatttctcaaaatcaaatattaatag 20278837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 407 - 492
Target Start/End: Original strand, 20006033 - 20006118
Alignment:
Q  407 ggaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaatag 492  Q
    ||||||||||| || |||||||||||| |||| |  |||||||||||||||||| |||||||||||||||||  | ||||||||||    
T  20006033 ggaccaaaacctccttgtccaagtttgttggataaatggaagttgtttgtggcaattgcaagcttttcaaaactatatagtaatag 20006118  T

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Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 20168632 - 20168700
Alignment:
Q  250 tcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttc 318  Q
    |||| ||||||||| ||||||||||| |||||||||||||| |||||||||  ||||||||||||||||    
T  20168632 tcctgcagcccttgaccagatgctcttgaaagtcttttaactgctatttcccgaccatcttgcagtttc 20168700  T

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Target: chr7; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 20243065 - 20242994
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttc 318  Q
    |||||||||| |||||||||||||||||||||||| |||||||| ||||| ||   ||||||||||||||||    
T  20243065 aattcctccaacccttgtccagatgctctagaaagccttttaactgctatgtctcgaccatcttgcagtttc 20242994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 20263555 - 20263484
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttc 318  Q
    ||||| |||| |||||||||||||||||||||||| |||||||| ||||||||   ||||||||||||||||    
T  20263555 aattcatccaacccttgtccagatgctctagaaagccttttaactgctatttctcgaccatcttgcagtttc 20263484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 20089748 - 20089824
Alignment:
Q  247 aattcctccagcccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgcagtttctcctg 323  Q
    ||||| || ||||||| ||||||| ||||||||||| ||||||| |||||||| | |||||||||||||||| ||||    
T  20089748 aattcttctagcccttttccagatactctagaaagtgttttaactgctatttcatgaccatcttgcagtttcccctg 20089824  T

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Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 20263398 - 20263318
Alignment:
Q  404 acgggaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaat 484  Q
    |||||||||||||||||||| ||||||||  | |||| ||  ||||||||||||||||||||||  |||| ||||||||||    
T  20263398 acgggaccaaaaccaccctgaccaagtttatttgacaagtcaaagttgtttgtggcagttgcaactttttgaaaatcaaat 20263318  T

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Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 19938576 - 19938522
Alignment:
Q  259 ccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgca 313  Q
    ||||||||||||||| |||||||||||||||| |||||||||| |||||| ||||    
T  19938576 ccttgtccagatgctttagaaagtcttttaactgctatttcctgaccatcatgca 19938522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 19969715 - 19969661
Alignment:
Q  259 ccttgtccagatgctctagaaagtcttttaacagctatttcctaaccatcttgca 313  Q
    ||||||||||||||| |||||||||||||||| |||||||||| |||||| ||||    
T  19969715 ccttgtccagatgctttagaaagtcttttaactgctatttcctgaccatcatgca 19969661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 20230710 - 20230617
Alignment:
Q  112 tttgatgtccttctccaaatgatatatgcacaaaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttatttctcc 205  Q
    |||||||||||||||||  ||||||||||||||| |||||| | ||||||| | ||||||||||  ||||  |||| |||||| || |||||||    
T  20230710 tttgatgtccttctccacgtgatatatgcacaaatgacaataataagagttgcaattatcactgtaattgcgatgaagattgtcttgtttctcc 20230617  T

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Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 20302864 - 20302752
Alignment:
Q  100 ttacntgagttttttgatgtccttctccaaatgatatatgcacaaaggacaattacaagagttcctattatcactgctattgtaatgatgattgttttat 199  Q
    |||| ||||||||||||  |||||||||| ||||||||  |||||| ||| ||||  ||||| |||| |||||||   || ||||||||||||||||| |    
T  20302864 ttacctgagttttttgaaatccttctccacatgatataaccacaaatgacgattaagagagtgcctagtatcactataatcgtaatgatgattgtttttt 20302765  T
Q  200 ttctccctctatc 212  Q
    || ||||| ||||    
T  20302764 ttgtccctttatc 20302752  T

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Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 492
Target Start/End: Complemental strand, 19938423 - 19938344
Alignment:
Q  413 aaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaatag 492  Q
    ||||| ||||| ||||||||| ||||   ||| |||||||| || ||||||||||||||  |||||| ||||||||||||    
T  19938423 aaacctccctgcccaagtttgttggatgagtgaaagttgttggttgcagttgcaagcttgccaaaattaaatagtaatag 19938344  T

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Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 492
Target Start/End: Complemental strand, 19969562 - 19969483
Alignment:
Q  413 aaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaatag 492  Q
    ||||| ||||| ||||||||| ||||   ||| |||||||| || ||||||||||||||  |||||| ||||||||||||    
T  19969562 aaacctccctgcccaagtttgttggatgagtgaaagttgttggttgcagttgcaagcttgccaaaattaaatagtaatag 19969483  T

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Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 491
Target Start/End: Original strand, 20089910 - 20089993
Alignment:
Q  408 gaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaata 491  Q
    |||||||||||| || |||||||||| |||||| |  |||||| ||||||||| ||  |||||||  |||| ||||||||||||    
T  20089910 gaccaaaaccactctctccaagtttgttggacaaggcgaagttctttgtggcaattttaagctttcgaaaaccaaatagtaata 20089993  T

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Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 20278593 - 20278536
Alignment:
Q  118 gtccttctccaaatgatatatgcacaaaggacaattacaagagttcctattatcactg 175  Q
    ||||||||||| | ||||||||||||||  |||||||| |||||||| ||||| ||||    
T  20278593 gtccttctccacaagatatatgcacaaataacaattactagagttccaattatgactg 20278536  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 407 - 489
Target Start/End: Original strand, 40824515 - 40824597
Alignment:
Q  407 ggaccaaaaccaccctgtccaagtttggtggacatgtggaagttgtttgtggcagttgcaagcttttcaaaatcaaatagtaa 489  Q
    ||||||||||||||||||||||||||  |||||   | |||||||||||||||| ||||||||||||||||||||||||||||    
T  40824515 ggaccaaaaccaccctgtccaagtttattggacgaatagaagttgtttgtggcaattgcaagcttttcaaaatcaaatagtaa 40824597  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Original strand, 4131414 - 4131451
Alignment:
Q  450 tgtttgtggcagttgcaagcttttcaaaatcaaatagt 487  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  4131414 tgtttgtggcagtttcaagcttttcaaaatcatatagt 4131451  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 4151864 - 4151900
Alignment:
Q  451 gtttgtggcagttgcaagcttttcaaaatcaaatagt 487  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  4151864 gtttgtggcagtttcaagcttttcaaaatcatatagt 4151900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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