View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0066-INSERTION-2 (Length: 424)
Name: NF0066-INSERTION-2
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0066-INSERTION-2 |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 42292898 - 42293126
Alignment:
| Q |
8 |
gtttgagagacaatgaaagatggaaaatagaatacaacaacctatattagttaatataaacttaagtgcaaagcaaagatcatgataccaaacctcat-- |
105 |
Q |
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| T |
42292898 |
gtttgagagacaatgaaagatggaaaatagaatacaacaacctgtattagttaatataaaattaagtgcaaagcaaagatcatgataccaaacctcatca |
42292997 |
T |
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| Q |
106 |
----------caattcattttatttagatctnnnnnnntgaaaggccgtatatttctggagtagaattttagatgtaaggttgggaaatcaaaaaacctg |
195 |
Q |
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| T |
42292998 |
attcttcttccaattcattttatttagatctaaaaaaatgaaaggccgtatatttctggagtagaattttagatgtaaggttgggaaatcaaaaaacctg |
42293097 |
T |
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| Q |
196 |
gttaaaactgcagaaacctgttttctgaa |
224 |
Q |
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| T |
42293098 |
gctaaaactgcagaaacctgttttctgaa |
42293126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 368
Target Start/End: Original strand, 42293152 - 42293298
Alignment:
| Q |
223 |
aaatgcttgtctctttatctgtagatctnnnnnnnn-tcatttctaattcatcttgtttggaaatatgaatacgaaaagttgtatannnnnnnnnnnnnn |
321 |
Q |
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| T |
42293152 |
aaatgcttgtctctttatctgtagatctaaaaaaaaatcatttctaattcatcttgtttggaaatatgaatacgaaaagttgtatattttaatttttttt |
42293251 |
T |
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| Q |
322 |
nnnnnnacaaaataccgttgttgggaatgtgaataatctaagattaa |
368 |
Q |
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| T |
42293252 |
atttttacaaaataccgttgttgggaatgtgaataatctaagattaa |
42293298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 15835374 - 15835345
Alignment:
| Q |
368 |
agagggatgtattggattaggattctatgg |
397 |
Q |
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| T |
15835374 |
agagggatgtattggattaggattctatgg |
15835345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 401
Target Start/End: Original strand, 31623584 - 31623614
Alignment:
| Q |
371 |
gggatgtattggattaggattctatggaatt |
401 |
Q |
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| T |
31623584 |
gggatgtattggattaggattctatggaatt |
31623614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 12094 - 12065
Alignment:
| Q |
368 |
agagggatgtattggattaggattctatgg |
397 |
Q |
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| T |
12094 |
agagggatgtattggattaggattctatgg |
12065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 395
Target Start/End: Complemental strand, 9882558 - 9882529
Alignment:
| Q |
366 |
taagagggatgtattggattaggattctat |
395 |
Q |
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| T |
9882558 |
taagagggatgtattggattaggattctat |
9882529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 17001347 - 17001315
Alignment:
| Q |
364 |
attaagagggatgtattggattaggattctatg |
396 |
Q |
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| T |
17001347 |
attaagggggatgtattggattaggattctatg |
17001315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 10728924 - 10728887
Alignment:
| Q |
364 |
attaagagggatgtattggattaggattctatggaatt |
401 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
10728924 |
attaagggggatgtattggattagcattctatggaatt |
10728887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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