View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0066-INSERTION-4 (Length: 344)

Name: NF0066-INSERTION-4
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0066-INSERTION-4
NF0066-INSERTION-4
[»] scaffold0038 (7 HSPs)
scaffold0038 (109-344)||(27751-27985)
scaffold0038 (140-344)||(117095-117296)
scaffold0038 (6-107)||(27656-27757)
scaffold0038 (129-344)||(43269-43491)
scaffold0038 (8-107)||(34933-35032)
scaffold0038 (6-53)||(117054-117101)
scaffold0038 (8-107)||(43174-43273)
[»] chr6 (22 HSPs)
chr6 (109-344)||(28227253-28227487)
chr6 (122-344)||(28181417-28181637)
chr6 (170-344)||(28185669-28185846)
chr6 (140-344)||(28325780-28325981)
chr6 (6-107)||(28227158-28227259)
chr6 (6-107)||(28181322-28181423)
chr6 (129-344)||(28243107-28243329)
chr6 (8-107)||(28234771-28234870)
chr6 (6-107)||(28185574-28185675)
chr6 (140-344)||(28297412-28297597)
chr6 (140-344)||(28514476-28514661)
chr6 (6-105)||(28297591-28297690)
chr6 (6-105)||(28514383-28514482)
chr6 (109-167)||(28185869-28185927)
chr6 (6-53)||(28325739-28325786)
chr6 (8-107)||(28243012-28243111)
chr6 (14-70)||(27337951-27338007)
chr6 (14-70)||(27398691-27398747)
chr6 (15-72)||(26617865-26617922)
chr6 (15-72)||(26723793-26723850)
chr6 (15-76)||(27214659-27214720)
chr6 (15-76)||(27234508-27234569)
[»] scaffold0019 (2 HSPs)
scaffold0019 (123-341)||(57957-58163)
scaffold0019 (6-81)||(58160-58235)


Alignment Details
Target: scaffold0038 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 109 - 344
Target Start/End: Complemental strand, 27985 - 27751
Alignment:
Q  109 aattcacagccatatcaatttattaataatagttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataa 208  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  27985 aattcacaatcatatcaatttattaataatagttgtataaatacaattcaaatattgttttgacatacaagtaa-ttaaacttgttaagaataaaaataa 27887  T
Q  209 tattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacct 308  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27886 tattttcaatttaaatagtgagatgaaatagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacct 27787  T
Q  309 aggattgaagtggtagccagagaagttagcagtttg 344  Q
    ||||||||  |||| |||||||||||||||||||||    
T  27786 aggattgatttggtggccagagaagttagcagtttg 27751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 140 - 344
Target Start/End: Complemental strand, 117296 - 117095
Alignment:
Q  140 gttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacag 239  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||| ||  || ||||||| | |    
T  117296 gttgtatgaatacaattcaaatattgttttgacatacaagtaacttacacttgttaagaataaaattaatatttccaatttcaactgtaagatgaatcgg 117197  T
Q  240 ttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagca 339  Q
    ||||||||||||| ||||||||| |||   |||||||||||   ||||||| ||| ||||| | |||| |||| |||| |||| ||| ||||||||||||    
T  117196 ttagaaaatagaaaattaaagaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctgagaagttagca 117100  T
Q  340 gtttg 344  Q
    |||||    
T  117099 gtttg 117095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 27757 - 27656
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataact 105  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  27757 cagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcatccagtgctttaccataact 27658  T
Q  106 gc 107  Q
    ||    
T  27657 gc 27656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 344
Target Start/End: Complemental strand, 43491 - 43269
Alignment:
Q  129 tattaataatagttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtc 228  Q
    |||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||  |||||||||| |||| ||  ||     
T  43491 tattgataatagttgtataaatacaattcaaatattgttttg-catacaagtaacttacacttgttaagaataaatttaatattttctatttcaactgta 43393  T
Q  229 agatgaaacagttagaaaatagaatattaaagaagtatg--------acatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtg 320  Q
    |||||||   |||||||||||||| ||||||||| | ||        |  ||||||||||||  |||||||||| ||||   |||||||| | |||| ||    
T  43392 agatgaattggttagaaaatagaaaattaaagaaatgtgttatatgtaactatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatg 43293  T
Q  321 gtagccagagaagttagcagtttg 344  Q
    || ||||||||||||||| |||||    
T  43292 gtggccagagaagttagctgtttg 43269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 35032 - 34933
Alignment:
Q  8 gtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataactgc 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||| ||||||||||  |||||| |||||||||||||    
T  35032 gtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatcatccagtgctttaccataactgc 34933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 117101 - 117054
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  117101 cagtttgagtaagagccatcttccatttctgcaacctctccatgctat 117054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 43273 - 43174
Alignment:
Q  8 gtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataactgc 107  Q
    |||||||| |||||  |||||||||||||||||||||||||| |||   || ||||||||||| |||| ||||| |||  |||||| |||||||||||||    
T  43273 gtttgagttagagcactcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgc 43174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 109 - 344
Target Start/End: Complemental strand, 28227487 - 28227253
Alignment:
Q  109 aattcacagccatatcaatttattaataatagttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataa 208  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  28227487 aattcacaatcatatcaatttattaataatagttgtataaatacaattcaaatattgttttgacatacaagtaa-ttaaacttgttaagaataaaaataa 28227389  T
Q  209 tattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacct 308  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28227388 tattttcaatttaaatagtgagatgaaatagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacct 28227289  T
Q  309 aggattgaagtggtagccagagaagttagcagtttg 344  Q
    ||||||||  |||| |||||||||||||||||||||    
T  28227288 aggattgatttggtggccagagaagttagcagtttg 28227253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 122 - 344
Target Start/End: Complemental strand, 28181637 - 28181417
Alignment:
Q  122 atcaatttattaataatagttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaattta 221  Q
    |||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||| |||||||  | ||||     
T  28181637 atcaattt-ttaataatagttgtataa-tacaattcaaatattgatttgacatacaagtaccttacacttgttaagaataaaattaatattacctatttc 28181540  T
Q  222 aatagtcagatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtgg 321  Q
    ||   | |||| |||||||| |||||||||| ||| ||||| ||| || |||||  |||||||||||||||||| | ||||||||||||||||||  |||    
T  28181539 aactataagataaaacagttcgaaaatagaacattcaagaaatatcacctatgtttgaatgtaaaacatgagtgcactacggtacctaggattgatttgg 28181440  T
Q  322 tagccagagaagttagcagtttg 344  Q
    | |||||||||||||||||||||    
T  28181439 tggccagagaagttagcagtttg 28181417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 170 - 344
Target Start/End: Complemental strand, 28185846 - 28185669
Alignment:
Q  170 gacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacagttagaaaatagaatattaaagaagtatgac 269  Q
    |||| |||||||||||| |||||||||||||||||| ||||| ||| |||||||  || |||||||||||| ||| ||||||||||||||||  ||||||    
T  28185846 gacatacaagtaacttacacttgttaagaataaaaagaatatattctatttaaaccgtaagatgaaacagtaagataatagaatattaaagagatatgac 28185747  T
Q  270 atatgtaagaatgtaaaacatgagtgaagtacggtacc---taggattgaagtggtagccagagaagttagcagtttg 344  Q
    ||||||||||||||||||||||||||||||  ||||||    ||||||||| |||| |||||||||||||||||||||    
T  28185746 atatgtaagaatgtaaaacatgagtgaagtggggtacccagcaggattgaaatggtggccagagaagttagcagtttg 28185669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 140 - 344
Target Start/End: Complemental strand, 28325981 - 28325780
Alignment:
Q  140 gttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacag 239  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||| ||  || ||||||| | |    
T  28325981 gttgtatgaatacaattcaaatattgttttgacatacaagtaacttacacttgttaagaataaaattaatatttccaatttcaactgtaagatgaatcgg 28325882  T
Q  240 ttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagca 339  Q
    ||||||||||||| ||||||||| |||   |||||||||||   ||||||| ||| ||||| | |||| |||| |||| |||| ||| ||||||||||||    
T  28325881 ttagaaaatagaaaattaaagaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctgagaagttagca 28325785  T
Q  340 gtttg 344  Q
    |||||    
T  28325784 gtttg 28325780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 28227259 - 28227158
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataact 105  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  28227259 cagtttgagtaagagccatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcatccagtgctttaccataact 28227160  T
Q  106 gc 107  Q
    ||    
T  28227159 gc 28227158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 28181423 - 28181322
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataact 105  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  28181423 cagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcatccagtgctttaccataact 28181324  T
Q  106 gc 107  Q
    ||    
T  28181323 gc 28181322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 344
Target Start/End: Complemental strand, 28243329 - 28243107
Alignment:
Q  129 tattaataatagttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtc 228  Q
    |||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||  |||||||||| |||| ||  ||     
T  28243329 tattgataatagttgtataaatacaattcaaatattgttttg-catacaagtaacttacacttgttaagaataaatttaatattttctatttcaactgta 28243231  T
Q  229 agatgaaacagttagaaaatagaatattaaagaagtatg--------acatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtg 320  Q
    |||||||   |||||||||||||| ||||||||| | ||        |  ||||||||||||  |||||||||| ||||   |||||||| | |||| ||    
T  28243230 agatgaattggttagaaaatagaaaattaaagaaatgtgttatatgtaactatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatg 28243131  T
Q  321 gtagccagagaagttagcagtttg 344  Q
    || ||||||||||||||| |||||    
T  28243130 gtggccagagaagttagctgtttg 28243107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 28234870 - 28234771
Alignment:
Q  8 gtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataactgc 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||| ||||||||||  |||||| |||||||||||||    
T  28234870 gtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatcatccagtgctttaccataactgc 28234771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 28185675 - 28185574
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataact 105  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||||||||| ||| ||||||||||  |||||| |||||||||||    
T  28185675 cagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttggaacttctttatatgatcatccagtgctttaccataact 28185576  T
Q  106 gc 107  Q
    ||    
T  28185575 gc 28185574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 344
Target Start/End: Original strand, 28297412 - 28297597
Alignment:
Q  140 gttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacag 239  Q
    ||||||| ||||||| |||||||||||||||||| | || ||||||  |||||||||||||| ||||||||||||| ||||||| | |  |||||||| |    
T  28297412 gttgtatgaatacaaatcaaatattgttttgacataaaa-taactttcacttgttaagaatagaaataatattttctatttaaacaatatgatgaaacgg 28297510  T
Q  240 ttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagca 339  Q
    || ||||||||||||||                  |||||||| ||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||    
T  28297511 ttggaaaatagaatatt------------------taagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagca 28297592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 344
Target Start/End: Complemental strand, 28514661 - 28514476
Alignment:
Q  140 gttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaaatagtcagatgaaacag 239  Q
    ||||||| ||||||| |||||||||||||||||| | || ||||||  |||||||||||||| ||||||||||||| ||||||| | |  |||||||| |    
T  28514661 gttgtatgaatacaaatcaaatattgttttgacataaaa-taactttcacttgttaagaatagaaataatattttctatttaaacaatatgatgaaacgg 28514563  T
Q  240 ttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggtagccagagaagttagca 339  Q
    || ||||||||||||||                  |||||||| ||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||    
T  28514562 ttggaaaatagaatatt------------------taagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagca 28514481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 28297591 - 28297690
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataact 105  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||  |||||| ||| |||||||    
T  28297591 cagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatatgatcatccagtgctttagcataact 28297690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 28514482 - 28514383
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataact 105  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||  |||||| ||| |||||||    
T  28514482 cagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatatgatcatccagtgctttagcataact 28514383  T

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Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 28185927 - 28185869
Alignment:
Q  109 aattcacagccatatcaatttattaataatagttgtataaatacaattcaaatattgtt 167  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28185927 aattcacagccacatcaatttattaataatagttgtataaatacaattcaaatattgtt 28185869  T

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Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 28325786 - 28325739
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28325786 cagtttgagtaagagccatcttccatttctgcaacctctccatgctat 28325739  T

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Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 28243111 - 28243012
Alignment:
Q  8 gtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatgatcacgcagtgcattaccataactgc 107  Q
    |||||||| |||||  |||||||||||||||||||||||||| |||   || ||||||||||| |||| ||||| |||  |||||| |||||||||||||    
T  28243111 gtttgagttagagcactcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgc 28243012  T

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Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 27337951 - 27338007
Alignment:
Q  14 gtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaac 70  Q
    |||||||||||||||||||||| ||||||||||||| | |  |||||||||||||||    
T  27337951 gtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaac 27338007  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 27398691 - 27398747
Alignment:
Q  14 gtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaac 70  Q
    |||||||||||||||||||||| ||||||||||||| | |  |||||||||||||||    
T  27398691 gtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaac 27398747  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26617922 - 26617865
Alignment:
Q  15 taagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacct 72  Q
    ||||||| ||||||||||||||||||| ||||||| | |  |||||||||||||||||    
T  26617922 taagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacct 26617865  T

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Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 26723850 - 26723793
Alignment:
Q  15 taagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacct 72  Q
    ||||||| ||||||||||||||||||| ||||||| | |  |||||||||||||||||    
T  26723850 taagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacct 26723793  T

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Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 27214720 - 27214659
Alignment:
Q  15 taagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctct 76  Q
    ||||||| ||||||||||||||||||| ||||||| | |  ||||||||||| |||||||||    
T  27214720 taagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27214659  T

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Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 27234508 - 27234569
Alignment:
Q  15 taagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctct 76  Q
    ||||||| ||||||||||||||||||| ||||||| | |  ||||||||||| |||||||||    
T  27234508 taagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27234569  T

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Target: scaffold0019 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 123 - 341
Target Start/End: Original strand, 57957 - 58163
Alignment:
Q  123 tcaatttattaataatagttgtataaatacaattcaaatattgttttgacaaacaagtaacttaaacttgttaagaataaaaataatattttcaatttaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           ||| |||||||||||||||||||| | ||||| ||||||    
T  57957 tcaatttattaataatagttgtataaatacaattcaaatattgttttgac-----------ttacacttgttaagaataaaaatatt-ttttctatttaa 58044  T
Q  223 atagtcagatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaagtacggtacctaggattgaagtggt 322  Q
    |   | | ||||||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||  ||||||||| |||||| ||||    
T  58045 actttaatatgaaacggttataaaatagaatattaaagagatatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggt 58144  T
Q  323 agccagagaagttagcagt 341  Q
     ||||||||||||||||||    
T  58145 ggccagagaagttagcagt 58163  T

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Target: scaffold0019; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 58160 - 58235
Alignment:
Q  6 cagtttgagtaagagccatcttccatttctgcaacctctccatgctatgattgttattttggaacctctctatatg 81  Q
    |||| |||||||||||  |||||||||||||||||||||| |||||||  ||| |||||||||||||||| |||||    
T  58160 cagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatg 58235  T

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