View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0066-INSERTION-6 (Length: 252)
Name: NF0066-INSERTION-6
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0066-INSERTION-6 |
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Alignment Details
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 10346395 - 10346439
Alignment:
| Q |
82 |
tatgtgtgaatcaaagaagtaaatgtgatttcattagcagatcat |
126 |
Q |
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| T |
10346395 |
tatgtgtgaatcaaagaagtaaatgtgatttcattagcagatcat |
10346439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 40636950 - 40636987
Alignment:
| Q |
86 |
tgtgaatcaaagaagtaaatgtgatttcattagcagat |
123 |
Q |
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||||||| ||||||||||||||||||||||||| |||| |
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| T |
40636950 |
tgtgaatgaaagaagtaaatgtgatttcattaggagat |
40636987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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