View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0066_low_1 (Length: 644)
Name: NF0066_low_1
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0066_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 80 - 554
Target Start/End: Original strand, 9921375 - 9921849
Alignment:
| Q |
80 |
atggacatcatcaccactgaggctgttgataaatgcaatgaagagagtcgaaagatcattagtggtgaggatataatacgggccatgggtaggttagggt |
179 |
Q |
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| T |
9921375 |
atgggcatcatcaccactgaggctgttgagaaatgcaatgaagagagtcgaaagatcattagcggtgaagatataatacgggccatgggtaggttagggt |
9921474 |
T |
|
| Q |
180 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaaccatgaggctcaattcagtggcatgtcaactgcttgtggattcaacatgga |
279 |
Q |
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| T |
9921475 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaaccatgaggctcaattcagtggcatgtcaactgcttgtggattcaacatgga |
9921574 |
T |
|
| Q |
280 |
tgggttgggtgctggtggctcgagcagtggtaatggccaatattgatatgcaattaatgtgatgccctatctatcgtacaataaaatgtgcttatggaag |
379 |
Q |
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| T |
9921575 |
tgggtcgggtactggtggctcgagcagtggtaatggccaatattgatatgcaattaatgtgatgccctatctatcgtacaataaaatgtgcttatggaag |
9921674 |
T |
|
| Q |
380 |
aaaagnnnnnnngtaatgattatggatatggttaaaataagttgtgcttaaaacttcataaattggtggtatttgaaagtatgttagttccttcttttta |
479 |
Q |
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| T |
9921675 |
aaaagtttttttgtaatagttatggatatggttaaattaagttgtgcttaaaacttcataaattggtgctatttgaaagtatgttagttccttcttttta |
9921774 |
T |
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| Q |
480 |
aggttgttttatttcatttgggtttcaatggtgatttgagtaattactaaatgtcatatatggaaaaacttgaga |
554 |
Q |
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| T |
9921775 |
aggttgttttatttcatttgggtttcaatggtgatttgagtaattactgaatgtcatatatggaaaaacttgaga |
9921849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 9911315 - 9911448
Alignment:
| Q |
97 |
tgaggctgttgataaatgcaatgaagagagtcgaaagatcattagtggtgaggatataatac-gggccatgggtaggttagggtttgaggactatgttgg |
195 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
9911315 |
tgaggttgttgataaatgcaatgaagagagtcgaaagatcattagtggtaaagatttaaatctgggccatgggtaggttagggtttgaggactatgttgg |
9911414 |
T |
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| Q |
196 |
tcctctatctcttctcctccaaaactatcgcaac |
229 |
Q |
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| T |
9911415 |
tcctctatctcttctcctccaaaactatcgcaac |
9911448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 9911488 - 9911568
Alignment:
| Q |
400 |
tatggatatggttaaaataagttgtgcttaaaacttcataaattggtggtatttgaaagtatgttagttccttctttttaag |
481 |
Q |
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| T |
9911488 |
tatggatatggttaaaataagttgtgcttaaaacttcatgaattggtgg-cgttgaaagtatgttggttcgttctttttaag |
9911568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 9911449 - 9911491
Alignment:
| Q |
287 |
ggtgctggtggctcgagcagtggtaatggccaatattgatatg |
329 |
Q |
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| T |
9911449 |
ggtgctagtggctcgagcagtggcaatggccaacattgatatg |
9911491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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