View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0066_low_10 (Length: 306)
Name: NF0066_low_10
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0066_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 49018995 - 49018853
Alignment:
| Q |
47 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49018995 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttctga |
49018896 |
T |
|
| Q |
147 |
tcaccaacacaactcacaaacagttccaaaatcactcatgcat |
189 |
Q |
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| T |
49018895 |
tcaccaacacaacacacaaacagttccaaaatcactcatgcat |
49018853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 8345097 - 8344964
Alignment:
| Q |
47 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
146 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
8345097 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
8344998 |
T |
|
| Q |
147 |
tcaccaacacaactcacaaacagttccaaaatca |
180 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
8344997 |
tcaccaacacaacacacaaacagttccaaaatca |
8344964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 42824544 - 42824677
Alignment:
| Q |
47 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
42824544 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
42824643 |
T |
|
| Q |
147 |
tcaccaacacaactcacaaacagttccaaaatca |
180 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |
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| T |
42824644 |
tcaccaacacaacacacaaacagttccaaaatca |
42824677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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