View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0066_low_11 (Length: 298)
Name: NF0066_low_11
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0066_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26782098 - 26782301
Alignment:
| Q |
1 |
tctttttgaacgacacaaataaaatatcatttttataatcaaattcatttaaggatataattagaaatgaaaaaatcactcaaaaacgaagtatttcttt |
100 |
Q |
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||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
26782098 |
tctttttaaacgacaacaacaaaatatcatttttataatcaaattcatttaaggatataattagaaatgaaaaaatcacctaaaaacgatgtatttcttt |
26782197 |
T |
|
| Q |
101 |
atatataatgcagatgtagatagatatagattattaattaaaactaatttttcaatgtgagactttaactagttttaattcacacactaattcaaagtct |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26782198 |
atatataatgtagatgtagatagatatagattattaattaaaactaatttttccacgtgagactttaactagttttaattcacacactaattcaaagtct |
26782297 |
T |
|
| Q |
201 |
ttta |
204 |
Q |
| |
|
|||| |
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| T |
26782298 |
ttta |
26782301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47410530 - 47410574
Alignment:
| Q |
1 |
tctttttgaacgacacaaataaaatatcatttttataatcaaatt |
45 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||| ||||||| |
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|
| T |
47410530 |
tctttttgaatgacaccaataaaatatcatttttatagtcaaatt |
47410574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20437693 - 20437628
Alignment:
| Q |
1 |
tctttttgaacgacacaaataaaatatcatttttataatcaaattcatttaaggatataattagaa |
66 |
Q |
| |
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||||| |||| |||||||| |||||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
20437693 |
tctttctgaatgacacaaacaaaataacatttttataaacaaatttgtttaaggatataattagaa |
20437628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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