View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0066_low_13 (Length: 236)

Name: NF0066_low_13
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0066_low_13
NF0066_low_13
[»] chr4 (8 HSPs)
chr4 (126-233)||(3762512-3762619)
chr4 (132-236)||(3776599-3776703)
chr4 (132-228)||(3745722-3745818)
chr4 (132-236)||(3780912-3781016)
chr4 (132-234)||(3751539-3751641)
chr4 (140-234)||(3755414-3755508)
chr4 (140-234)||(3766942-3767036)
chr4 (197-234)||(3789125-3789162)
[»] chr5 (1 HSPs)
chr5 (24-121)||(42010321-42010418)
[»] chr3 (1 HSPs)
chr3 (24-121)||(1245659-1245756)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 3762512 - 3762619
Alignment:
Q  126 cactgtcaccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagc 225  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc 3762611  T
Q  226 aaatttca 233  Q
    ||| ||||    
T  3762612 aaaattca 3762619  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 3776599 - 3776703
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaattt 231  Q
    |||||||||||||||| |||||||||||||||  |||  |||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||    
T  3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagcaaaatt 3776698  T
Q  232 cattg 236  Q
    |||||    
T  3776699 cattg 3776703  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 3745722 - 3745818
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaa 228  Q
    ||||||||| |||||| |||||||||||||||| ||| | ||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaa 3745818  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 3780912 - 3781016
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaattt 231  Q
    ||||||||||||||||||||||||||  |||||| || ||||||||||| | |||||||  |||||| |||||||||||||||||||| |||||||| ||    
T  3780912 caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagcaaaatt 3781011  T
Q  232 cattg 236  Q
    |||||    
T  3781012 cattg 3781016  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 3751539 - 3751641
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaatagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaattt 231  Q
    |||||| || ||||||||| ||| ||||||||||| | | ||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| ||    
T  3751539 caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaagtt 3751638  T
Q  232 cat 234  Q
    |||    
T  3751639 cat 3751641  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 3755414 - 3755508
Alignment:
Q  140 acaggcatctccctaaccttattaatagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaatttcat 234  Q
    ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||   |||||||||||||||||||||||| | |||||||| |||||    
T  3755414 acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcat 3755508  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 3766942 - 3767036
Alignment:
Q  140 acaggcatctccctaaccttattaatagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaatttcat 234  Q
    ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||   |||||||||||||||||||||||| | |||||||| |||||    
T  3766942 acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcat 3767036  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 3789125 - 3789162
Alignment:
Q  197 cttccattatactttccttcaatcaaagcaaatttcat 234  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  3789125 cttccattatactttccttcaaacaaagcaaagttcat 3789162  T

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Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
Q  24 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagacacaggttctgct 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  42010418 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct 42010321  T

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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
Q  24 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagacacaggttctgct 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  1245756 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct 1245659  T

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