View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0066_low_3 (Length: 507)
Name: NF0066_low_3
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0066_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 98 - 501
Target Start/End: Original strand, 25217926 - 25218330
Alignment:
| Q |
98 |
tttttgtactgtctaacttacatccaaaaataagtagattatcaacactggaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25217926 |
tttttgtactgtctaacttacatccaaaaataagtagattattaacattgtaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
25218025 |
T |
|
| Q |
198 |
aattagacaactgatgataatatgtgtattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcatc-ccnnnn |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
25218026 |
aattagacaactgatgataatatgtgcattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcgtcacaaaaa |
25218125 |
T |
|
| Q |
297 |
nnnctatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagttggaagagtgtgtgcagactaagcata |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
25218126 |
aaactatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagctggaagaatttgtgcagactaagcata |
25218225 |
T |
|
| Q |
397 |
tgggtggacttggagtacaaaatttggtgttattcaacgtggctttgctcaccgatatggagatggatgtacctctgtgaggaggaagcggtttggcatc |
496 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
25218226 |
tgggtggacttggagtacaaaattaggagttattcaacgtggctttgctcaccgatatggagatggaggtacctttgtgaggaggaagcggtttggcatc |
25218325 |
T |
|
| Q |
497 |
actta |
501 |
Q |
| |
|
|||| |
|
|
| T |
25218326 |
cctta |
25218330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 98 - 501
Target Start/End: Original strand, 25282081 - 25282485
Alignment:
| Q |
98 |
tttttgtactgtctaacttacatccaaaaataagtagattatcaacactggaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25282081 |
tttttgtactgtctaacttacatccaaaaataagtagattattaacattgtaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
25282180 |
T |
|
| Q |
198 |
aattagacaactgatgataatatgtgtattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcatc-ccnnnn |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
25282181 |
aattagacaactgatgataatatgtgcattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcgtcacaaaaa |
25282280 |
T |
|
| Q |
297 |
nnnctatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagttggaagagtgtgtgcagactaagcata |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
25282281 |
aaactatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagctggaagaatttgtgcagactaagcata |
25282380 |
T |
|
| Q |
397 |
tgggtggacttggagtacaaaatttggtgttattcaacgtggctttgctcaccgatatggagatggatgtacctctgtgaggaggaagcggtttggcatc |
496 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
25282381 |
tgggtggacttggagtacaaaattaggagttattcaacgtggctttgctcaccgatatggagatggaggtacctttgtgaggaggaagcggtttggcatc |
25282480 |
T |
|
| Q |
497 |
actta |
501 |
Q |
| |
|
|||| |
|
|
| T |
25282481 |
cctta |
25282485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 37158858 - 37158811
Alignment:
| Q |
245 |
attctttcttctttccaaaacttacatgtttgtcatcatcttcatccc |
292 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||||||||||||||||||| |
|
|
| T |
37158858 |
attctttcttcttgccgaaaattacatgattgtcatcatcttcatccc |
37158811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 43392189 - 43392149
Alignment:
| Q |
190 |
acaagcttaattagacaactgatgataatatgtgtattctc |
230 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
43392189 |
acaagcttaattagaccattgatgataatatgtgcattctc |
43392149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1163 times since January 2019
Visitors: 1293