View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0066_low_4 (Length: 506)
Name: NF0066_low_4
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0066_low_4
Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 91 - 475
Target Start/End: Complemental strand, 25218717 - 25218329
Alignment:
Q
91
atcatcagaattagcaaacggagatgagataaagagatggtcgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata
190
Q
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
25218717
atcatcagaattagcaaacggagatgagataaagagatggttgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata
25218618
T
Q
191
attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaagactaaaatcacctacc
290
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
25218617
attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaatactaaaatcacctacc
25218518
T
Q
291
catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa
390
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
25218517
catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa
25218418
T
Q
391
gcttgaaatatctacaccaaagtaagacgtttgaac----tattactgcactgacttgtagtgacccaattaccaaaggaattcccata
475
Q
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
25218417
gcttcaaatatctacaccaaagtaagacgtttgaactatatattactgcactgacttgtagtgacccaattaccaaaggaattcccata
25218329
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 91 - 475
Target Start/End: Complemental strand, 25282872 - 25282484
Alignment:
Q
91
atcatcagaattagcaaacggagatgagataaagagatggtcgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata
190
Q
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
25282872
atcatcagaattagcaaacggagatgagataaagagatggttgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata
25282773
T
Q
191
attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaagactaaaatcacctacc
290
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
25282772
attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaatactaaaatcacctacc
25282673
T
Q
291
catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa
390
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
25282672
catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa
25282573
T
Q
391
gcttgaaatatctacaccaaagtaagacgtttgaac----tattactgcactgacttgtagtgacccaattaccaaaggaattcccata
475
Q
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
25282572
gcttcaaatatctacaccaaagtaagacgtttgaactatatattactgcactgacttgtagtgacccaattaccaaaggaattcccata
25282484
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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