View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0066_low_5 (Length: 431)
Name: NF0066_low_5
Description: NF0066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0066_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 33 - 420
Target Start/End: Original strand, 33531514 - 33531901
Alignment:
| Q |
33 |
gggagttcccgagtttgaaccccgattgaaacaacttttggtccaacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaa |
132 |
Q |
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| T |
33531514 |
gggagttcccgagtttgaaccccgattgaaataacttttggtccgacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaa |
33531613 |
T |
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| Q |
133 |
ttcagaggattaagacaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaagtatattgtcgccaaacggctatg |
232 |
Q |
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| T |
33531614 |
ttcagaggattaagaaaggtatactatttaattgagtgaagcatattaagttattcatcattaacaagtacctgaagtatattgtcgccaaacggctatg |
33531713 |
T |
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| Q |
233 |
agctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaaccttcccaaaccaatcaaagcagcactcttgttacaa |
332 |
Q |
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| T |
33531714 |
agctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaaccttcccaaaccaatcaaagcagcactcttgttacaa |
33531813 |
T |
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| Q |
333 |
tgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatcttccttgtttgtatgcttcat |
420 |
Q |
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| T |
33531814 |
tgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatcttccttgtttgtatgcttcat |
33531901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 200 - 391
Target Start/End: Original strand, 26209619 - 26209810
Alignment:
| Q |
200 |
gtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaacctt |
299 |
Q |
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| T |
26209619 |
gtacctgaaatatattgttgccaaacgattgtgagctctgttataagaaggatccaaccgaatagattcctcacactcaataattgcttcttgaaacctt |
26209718 |
T |
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| Q |
300 |
cccaaaccaatcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctc |
391 |
Q |
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|| || |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
26209719 |
cctaatccaatcaaagcagcactcttattgcaatgataagttgccttatttgaatcaatagcaattgctttgtcatacaaagccaaagcctc |
26209810 |
T |
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