View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0069_high_18 (Length: 252)
Name: NF0069_high_18
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_high_18 |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 18366655 - 18366544
Alignment:
| Q |
66 |
aaggcactgatcaatttgtgttcctgtttcagagattttcaaaaagaaaccccatcttcatttagtttgtctcccatgttgtcaatattcccacaattta |
165 |
Q |
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|||||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18366655 |
aaggcattgataaatttgtgttcctgtctcggagattttcaaaaagaaaccccatcttcatttagtttgtctcccaggttgtcaatattcccacaattta |
18366556 |
T |
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| Q |
166 |
tgtttcacttac |
177 |
Q |
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|||||||||||| |
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| T |
18366555 |
tgtttcacttac |
18366544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 18371919 - 18371808
Alignment:
| Q |
66 |
aaggcactgatcaatttgtgttcctgtttcagagattttcaaaaagaaaccccatcttcatttagtttgtctcccatgttgtcaatattcccacaattta |
165 |
Q |
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|||||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18371919 |
aaggcattgataaatttgtgttcctgtctcggagattttcaaaaagaaaccccatcttcatttagtttgtctcccaggttgtcaatattcccacaattta |
18371820 |
T |
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| Q |
166 |
tgtttcacttac |
177 |
Q |
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|||||||||||| |
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| T |
18371819 |
tgtttcacttac |
18371808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 18376209 - 18376098
Alignment:
| Q |
66 |
aaggcactgatcaatttgtgttcctgtttcagagattttcaaaaagaaaccccatcttcatttagtttgtctcccatgttgtcaatattcccacaattta |
165 |
Q |
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| T |
18376209 |
aaggcattgataaatttgtgttcctgtctcggagattttcaaaaagaaaccccatcttcatttagtttgtctcccaggttgtcaatattcccacaattta |
18376110 |
T |
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| Q |
166 |
tgtttcacttac |
177 |
Q |
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|||||||||||| |
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| T |
18376109 |
tgtttcacttac |
18376098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 2975928 - 2976037
Alignment:
| Q |
66 |
aaggcactgatcaatttgtgttcctgtttcagagattttcaaaaagaaaccccatcttcatttagtttgtctcccatgttgtcaatattcccacaattta |
165 |
Q |
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|||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2975928 |
aaggcattgataaatttgtgttcccgtttcggagattttcaaaaagaaaccccatcttcatttagtttgtctcccaggttgtcaatattcccacaattta |
2976027 |
T |
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| Q |
166 |
tgtttcactt |
175 |
Q |
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|||||||||| |
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| T |
2976028 |
tgtttcactt |
2976037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 12631048 - 12631000
Alignment:
| Q |
204 |
ggtgtttgagatgaaaggaacaggagaagataattaggtgagaagattt |
252 |
Q |
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|||||||||||||||||||| |||||| || |||||||||||||||||| |
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| T |
12631048 |
ggtgtttgagatgaaaggaataggagaggagaattaggtgagaagattt |
12631000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 18852006 - 18852054
Alignment:
| Q |
204 |
ggtgtttgagatgaaaggaacaggagaagataattaggtgagaagattt |
252 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
18852006 |
ggtgtttgagatgaaaggaacaatagaagggaattaggtgagaagattt |
18852054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 50880386 - 50880338
Alignment:
| Q |
204 |
ggtgtttgagatgaaaggaacaggagaagataattaggtgagaagattt |
252 |
Q |
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| T |
50880386 |
ggtgtttgagatgaaaggaacaagagaagagaattaggtgagaatattt |
50880338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 11348101 - 11348139
Alignment:
| Q |
204 |
ggtgtttgagatgaaaggaacaggagaagataattaggt |
242 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| |
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| T |
11348101 |
ggtgtttgagatgaaaggaacaagagaagagaattaggt |
11348139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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