View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0069_high_3 (Length: 539)
Name: NF0069_high_3
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 67 - 535
Target Start/End: Original strand, 6485801 - 6486269
Alignment:
| Q |
67 |
catcatcatgggaagtaatggattccaagcactttgaatcggcgattctccaaactttgacggttctgtcccatgaagcagagtagaggtaggttttgtc |
166 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485801 |
catcctcatgggaagtaatggattccaagcactttgaatcggcgattctccaaactttgacggttctgtcccatgaagcagagtagaggtaggttttgtc |
6485900 |
T |
|
| Q |
167 |
tggagaaaggcttaggcatgaaactgcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataattgcttggtttaatcgagctt |
266 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6485901 |
tggagaaagacttaggcatgaaactgcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataattgcttggtttaattgagctt |
6486000 |
T |
|
| Q |
267 |
ttgaagatgtctttgagtgttggtaatgttccggcacgtttgtgaacgctagggttcttgagagaaactttccaaacacggattttaccgtcttggtgac |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6486001 |
ttgaagatgtctttgagtgttggtaatgttccagcacgtttgtgaacgctagggttcttgagagagactttccaaacacggattttaccgtcttggtgac |
6486100 |
T |
|
| Q |
367 |
cagtgaagatcttttgaccggatattatgattgctttcaccagtccactgttggatttgaatccgcaatattcttgaagattcttccacacacgaatgtt |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486101 |
cagtgaagatcttttgaccggatattatgattgctttcaccagtccactgttggatttgaatccgcaatattcttgaagattcttccacacacgaatgtt |
6486200 |
T |
|
| Q |
467 |
cttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatgtgaccctcttcgcg |
535 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6486201 |
cttgctgtctgagccggtgtataataagtcaccggatgcggctaaagaataaatgtgaccctcttcgcg |
6486269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 536
Target Start/End: Original strand, 25703316 - 25703390
Alignment:
| Q |
462 |
atgttcttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatgtgaccctcttcgcga |
536 |
Q |
| |
|
||||| ||||| || | |||||||||||| | |||||||||| ||||||| || || |||||||| ||||||||| |
|
|
| T |
25703316 |
atgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcga |
25703390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 493
Target Start/End: Original strand, 6917655 - 6917703
Alignment:
| Q |
445 |
gattcttccacacacgaatgttcttgctgtctgaaccggtgtataataa |
493 |
Q |
| |
|
|||||||||| ||||||||||| || || || ||||||||||||||||| |
|
|
| T |
6917655 |
gattcttccaaacacgaatgtttttactatcagaaccggtgtataataa |
6917703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 936 times since January 2019
Visitors: 1288