View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0069_high_6 (Length: 471)
Name: NF0069_high_6
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 80 - 467
Target Start/End: Original strand, 6485882 - 6486269
Alignment:
| Q |
80 |
agtagaggtaggttttgtctggagaaaggcttaggcatgaaactgcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataatt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485882 |
agtagaggtaggttttgtctggagaaagacttaggcatgaaactgcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataatt |
6485981 |
T |
|
| Q |
180 |
gcttggtttaatcgagcttttgaagatgtctttgagtgttggtaatgttccggcacgtttgtgaacgctagggttcttgagagaaactttccaaacacgg |
279 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6485982 |
gcttggtttaattgagcttttgaagatgtctttgagtgttggtaatgttccagcacgtttgtgaacgctagggttcttgagagagactttccaaacacgg |
6486081 |
T |
|
| Q |
280 |
attttaccgtcttggtgaccagtgaagatcttttgaccggatattatgattgctttcaccagtccactgttggatttgaatccgcaatattcttgaagat |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6486082 |
attttaccgtcttggtgaccagtgaagatcttttgaccggatattatgattgctttcaccagtccactgttggatttgaatccgcaatattcttgaagat |
6486181 |
T |
|
| Q |
380 |
tcttccacacacgaatgttcttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatgtgaccctcttcgcg |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6486182 |
tcttccacacacgaatgttcttgctgtctgagccggtgtataataagtcaccggatgcggctaaagaataaatgtgaccctcttcgcg |
6486269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 49018853 - 49018934
Alignment:
| Q |
7 |
atgcatgagtgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggt |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49018853 |
atgcatgagtgattttggaactgtttgtgtgttgtgttggtgatcagaaccaattaattggaggatggtacaaagtagaggt |
49018934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 8344964 - 8345036
Alignment:
| Q |
16 |
tgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggt |
88 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8344964 |
tgattttggaactgtttgtgtgttgtgttggtgaccagaaccaattaattggaggatggtacaaagtagaggt |
8345036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 42824677 - 42824605
Alignment:
| Q |
16 |
tgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggt |
88 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824677 |
tgattttggaactgtttgtgtgttgtgttggtgaccagaaccaattaattggaggatggtacaaagtagaggt |
42824605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 6917655 - 6917703
Alignment:
| Q |
377 |
gattcttccacacacgaatgttcttgctgtctgaaccggtgtataataa |
425 |
Q |
| |
|
|||||||||| ||||||||||| || || || ||||||||||||||||| |
|
|
| T |
6917655 |
gattcttccaaacacgaatgtttttactatcagaaccggtgtataataa |
6917703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 468
Target Start/End: Original strand, 25703316 - 25703390
Alignment:
| Q |
394 |
atgttcttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatgtgaccctcttcgcga |
468 |
Q |
| |
|
||||| ||||| || | |||||||||||| | |||||||||| ||||||| || || |||||||| ||||||||| |
|
|
| T |
25703316 |
atgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcga |
25703390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1271 times since January 2019
Visitors: 1296