View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0069_low_1 (Length: 855)
Name: NF0069_low_1
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 759
Target Start/End: Complemental strand, 55696735 - 55695975
Alignment:
| Q |
1 |
ttcccagcttattcatctatgcctgtcatgcaagctcgacttaaagtcattacccaagaacatattggctctagttttggtacttggtgaacatacctgc |
100 |
Q |
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| T |
55696735 |
ttcccagcttattcatctatgcctgtcatgcaagctcgtcttaaagtcattacccaagaacatattggctctagttttggtacttggtgaacatacctgc |
55696636 |
T |
|
| Q |
101 |
aatctggaaagaaactggttttgatttgactgcacatagaattattgttctgcagctttgtacagactataggagcatcccatctgttgtcctctagttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696635 |
aatctggaaagaaactggttttgatttgactgcacatagaattatcgttctgcagctttgtacagactataggagcatcccatctgttgtcctctagttg |
55696536 |
T |
|
| Q |
201 |
gatactttgagaaagttgtcaaagttctgttttggaaagtagtcaagggatgtaattttattgatcttggtcaaatgtttatatggataaaatattaata |
300 |
Q |
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| T |
55696535 |
gatactttgagaaagttatcaaagttctgttttggaaagtagtcaagggatgtaattttattgatcttggtcaaatgtttatatggataaaatattaata |
55696436 |
T |
|
| Q |
301 |
atacatgatttgaaggannnnnnnnnnatatctacattctagttaatagctgctggttcgtcatcgggagtgtggcacaacaattaagtttgtgaagtgc |
400 |
Q |
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| T |
55696435 |
atacaggatttgaagga-tttttttttatatctacattcaagttaatagctgctggttcgtcatcgggagtgtggcacaaccattaagtttgtgaagtgc |
55696337 |
T |
|
| Q |
401 |
tagcagcgcattctcgaacactttctgaaatgtgttatgtatacgtttggtttggcgatagcatcggttttcttgcgttccaaggtaaatgcattgtgca |
500 |
Q |
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| T |
55696336 |
tagcagcgcattctcgaacactttctgaaatgtgttatgtatacgtttggtttggcgatagcatcagttttcttgcattccaaggtaaatgcattgttca |
55696237 |
T |
|
| Q |
501 |
aattgggaaactacgtggtgtagcagcaaccaaacattggatcaagattctctctattg--nnnnnnnntttgaggcaataatgtagagatcttaatcag |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
55696236 |
aattgggaaactacgtggtgtagcagcaaccaaacacgggatcaagattctctctattgaaaaaaaaaacttgaggaaataatgtagagatcttaatcac |
55696137 |
T |
|
| Q |
599 |
tgatcttgaccattgataatatggagatcaatggttaagatcacctcattatttcctcaagnnnnnnnnncccaattgagagaatccatttccctagttt |
698 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55696136 |
tgatcttgaccattgataatatggagatcaatggttaagatctcctcattatttcctcaag-ttttttttcccaattgagagaatccatttccctagttt |
55696038 |
T |
|
| Q |
699 |
ctatggg--atccctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatg |
759 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696037 |
ctatgggatatccctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatg |
55695975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 641
Target Start/End: Original strand, 7898163 - 7898204
Alignment:
| Q |
600 |
gatcttgaccattgataatatggagatcaatggttaagatca |
641 |
Q |
| |
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||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
7898163 |
gatcttgaccattgataatgtggagatcaatggtcaagatca |
7898204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 608 - 640
Target Start/End: Original strand, 26919500 - 26919532
Alignment:
| Q |
608 |
ccattgataatatggagatcaatggttaagatc |
640 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
26919500 |
ccattgataatatggagatcaatggttaagatc |
26919532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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