View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0069_low_11 (Length: 378)
Name: NF0069_low_11
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 4831215 - 4831422
Alignment:
| Q |
1 |
tagtcctaatggagaatctccttctacttttctctcaatctcatcatcaacatcttatcctccaaataatttgatgatgcaaatgcaaacttgttctcca |
100 |
Q |
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| T |
4831215 |
tagtcctaatggagaatctccttctacttttctctcaatctcatcatcaacatcttatcctccaaataatttgatgatgcaaatgcaagcttgttctcca |
4831314 |
T |
|
| Q |
101 |
tcttttaattttcaagtggataattcagctaggttgatcaacaatagcatttcttctttttctagcaaagtggaccagcaacatgctacttgcacctcca |
200 |
Q |
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| T |
4831315 |
tcttttaattttcaagtggataattcagctaggttgatcaacaatagcatttcttctttttctagcaaagtggaccagcaacatgctacttgcacctcca |
4831414 |
T |
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| Q |
201 |
ttgatgat |
208 |
Q |
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|||||||| |
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| T |
4831415 |
ttgatgat |
4831422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 37534318 - 37534251
Alignment:
| Q |
311 |
taatagacattttaacattatctgttgtgagtatttattaccactatttaatctatatgagtcctatt |
378 |
Q |
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||||| ||||||||||| ||||||||||||||||||||| | | ||||||||| |||||||||||||| |
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| T |
37534318 |
taatacacattttaacactatctgttgtgagtatttattgcaaatatttaatcgatatgagtcctatt |
37534251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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