View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0069_low_13 (Length: 323)
Name: NF0069_low_13
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_low_13 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 50880197 - 50880283
Alignment:
| Q |
237 |
aaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50880197 |
aaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatg |
50880283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 11348269 - 11348196
Alignment:
| Q |
250 |
aacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatg |
323 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11348269 |
aacagtgattgaattgaatcaagcaaacatttcacaaaagcagtagcaataactccttaacttcaacaaccatg |
11348196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 21728274 - 21728328
Alignment:
| Q |
269 |
caaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatg |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
21728274 |
caaacaagcatttcacaaacacagtagcaagaacttcttaacttcaacaaccatg |
21728328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 48081157 - 48081067
Alignment:
| Q |
233 |
acagaaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatg |
323 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
48081157 |
acagaaaacaatcttttaacggtgattgaattgaatcaaacaagcatttcacaaaaacagtaacaataactccttaacttcaacaaccatg |
48081067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 538429 - 538360
Alignment:
| Q |
29 |
atcaagcacgaacagcttaaagtttgcgtaaacctcccaaccacgagaaagcttctcagtatctgctatt |
98 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
538429 |
atcaagcacgaacagcttaaagtttacgtaaacctcccaaccgcgagaaagcttctcagtatctgctatt |
538360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 18852157 - 18852109
Alignment:
| Q |
275 |
agcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatg |
323 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
18852157 |
agcattgcacaacaacagtagcaatcactccttaacttcaacaaccatg |
18852109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 36808357 - 36808393
Alignment:
| Q |
239 |
aacaatcttttaacagtgattgaattgaatcaaacaa |
275 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| |
|
|
| T |
36808357 |
aacaatctttcaagagtgattgaattgaatcaaacaa |
36808393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1306 times since January 2019
Visitors: 1296