View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0069_low_19 (Length: 263)

Name: NF0069_low_19
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0069_low_19
NF0069_low_19
[»] chr6 (1 HSPs)
chr6 (64-244)||(6713699-6713877)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 64 - 244
Target Start/End: Original strand, 6713699 - 6713877
Alignment:
Q  64 gagtggcaaatcaaatcatatatatagaaagaaattgagtacaagagatacatatatccaatgcaatgtcaaaaggaaaagcaaaaacgatgcaactaaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6713699 gagtggcaaatcaaatcatatatatagaaagaaattgagtacaagagatacatatatccaatgcaatgtcaaaaggaaaagcaaaaacgatgcaactaaa 6713798  T
Q  164 atcaagaaccatgagattcaacaaactcaatatcctgctaaaggcccgaggaatcatcaaaacataggggcacaatcaaca 244  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6713799 atcaagaaccat--gattcaacaaactcaatatcctgctaaaggcccgaggaatcatcaaaacataggggcacaatcaaca 6713877  T

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