View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0069_low_2 (Length: 733)
Name: NF0069_low_2
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 86 - 729
Target Start/End: Original strand, 6485626 - 6486269
Alignment:
| Q |
86 |
gaacctgtgctgtcaattgctaaagcagttactgcacattcttgttttaaaagttgtttaaccattacatgttttgttgctttaccacgtggttctcttc |
185 |
Q |
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| T |
6485626 |
gaacctgtgctgtcaattgctaaagcagttactgcacattcttgttttaaaagttgtttaaccattacatgttttgttgctttaccacgtggttctcttc |
6485725 |
T |
|
| Q |
186 |
gccacactttaactgttccgtctgctgaaccagagaaaacaattccgtcgtttccacaaacgacggcgttaactgcatcctcatgggaagtaatggattc |
285 |
Q |
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| T |
6485726 |
gccacactttaactgttccgtctgctgaaccagagaaaacaattccgtcgtttccacaaacgacggcgttaactgcatcctcatgggaagtaatggattc |
6485825 |
T |
|
| Q |
286 |
caagcactttgaatcggcgattctccaaactttgacggttctgtcccatgaagcagagtagaggtaggttttgtctggagaaaggcttaggcatgaaact |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6485826 |
caagcactttgaatcggcgattctccaaactttgacggttctgtcccatgaagcagagtagaggtaggttttgtctggagaaagacttaggcatgaaact |
6485925 |
T |
|
| Q |
386 |
gcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataattgcttggtttaatcgagcttttgaagatgtctttgagtgttggta |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6485926 |
gcatccgaatgtttgatccataatgcagttcggtgttttctaacctcgacataattgcttggtttaattgagcttttgaagatgtctttgagtgttggta |
6486025 |
T |
|
| Q |
486 |
atgttccggcacgtttgtgaacgctagggttcttgagagaaactttccaaacacggattttaccgtcttggtgaccagtgaagatcttttgaccggatat |
585 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6486026 |
atgttccagcacgtttgtgaacgctagggttcttgagagagactttccaaacacggattttaccgtcttggtgaccagtgaagatcttttgaccggatat |
6486125 |
T |
|
| Q |
586 |
tatgattgctttcaccagtccactgttggatttgaatccgcaatattcttgaagattcttccacacacgaatgttcttgctgtctgaaccggtgtataat |
685 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6486126 |
tatgattgctttcaccagtccactgttggatttgaatccgcaatattcttgaagattcttccacacacgaatgttcttgctgtctgagccggtgtataat |
6486225 |
T |
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| Q |
686 |
aagtcaccggaagcggctaaagaataaatgtgaccctcttcgcg |
729 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6486226 |
aagtcaccggatgcggctaaagaataaatgtgaccctcttcgcg |
6486269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 730
Target Start/End: Original strand, 25703316 - 25703390
Alignment:
| Q |
656 |
atgttcttgctgtctgaaccggtgtataataagtcaccggaagcggctaaagaataaatgtgaccctcttcgcga |
730 |
Q |
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||||| ||||| || | |||||||||||| | |||||||||| ||||||| || || |||||||| ||||||||| |
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| T |
25703316 |
atgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcga |
25703390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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