View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0069_low_3 (Length: 630)
Name: NF0069_low_3
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 64 - 244
Target Start/End: Original strand, 6713699 - 6713877
Alignment:
| Q |
64 |
gagtggcaaatcaaatcatatatatagaaagaaattgagtacaagagatacatatatccaatgcaatgtcaaaaggaaaagcaaaaacgatgcaactaaa |
163 |
Q |
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| T |
6713699 |
gagtggcaaatcaaatcatatatatagaaagaaattgagtacaagagatacatatatccaatgcaatgtcaaaaggaaaagcaaaaacgatgcaactaaa |
6713798 |
T |
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| Q |
164 |
atcaagaaccatgagattcaacaaactcaatatcctgctaaaggcccgaggaatcatcaaaacataggggcacaatcaaca |
244 |
Q |
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| T |
6713799 |
atcaagaaccat--gattcaacaaactcaatatcctgctaaaggcccgaggaatcatcaaaacataggggcacaatcaaca |
6713877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 244 - 460
Target Start/End: Original strand, 6713925 - 6714153
Alignment:
| Q |
244 |
acccaagacacattatcctccataagagttagggtttcactactaatgaggttnnnnnnntccacccttaaatcttgttcttggatnnnnnnnnnn---- |
339 |
Q |
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| T |
6713925 |
acccaagacacattatcctccataagagttagggtttaactactaatgaggttaaaaaaatccacccttaaatcttgttcttggataaaaaaaaaaaaaa |
6714024 |
T |
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| Q |
340 |
--------gccttacatcaaagggtacgtaagtcagagaccacatctctttgattggaaactagaaaaccctagataattgatccgcaaagcaagaacct |
431 |
Q |
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| T |
6714025 |
aaaaaaaagccttacatcaaagggtacgtaagtcagagaccacatctctttgattggaaactagaaaaccctagataattgatccgcaaagcaagaacct |
6714124 |
T |
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| Q |
432 |
ataccaagatattaaacaaccactttcac |
460 |
Q |
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| T |
6714125 |
ataccaagatattaaacaaccactttcac |
6714153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 516 - 601
Target Start/End: Original strand, 6486275 - 6486360
Alignment:
| Q |
516 |
gtgaaccgattagtgaattctgtggaggtgtgtcttcatgttgtgaccattgtggctttgagaatggtgaatttgttgtttgattc |
601 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6486275 |
gtgaaccaattagtgaattctgtggaggcgtgtcttcatgttgtgaccattgtggctttgagaatggtgaatttgttgtttgattc |
6486360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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