View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0069_low_5 (Length: 505)
Name: NF0069_low_5
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 96 - 499
Target Start/End: Original strand, 25217926 - 25218330
Alignment:
| Q |
96 |
tttttgtactgtctaacttacatccaaaaataagtagattatcaacactggaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25217926 |
tttttgtactgtctaacttacatccaaaaataagtagattattaacattgtaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
25218025 |
T |
|
| Q |
196 |
aattagacaactgatgataatatgtgtattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcatc-ccnnnn |
294 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
25218026 |
aattagacaactgatgataatatgtgcattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcgtcacaaaaa |
25218125 |
T |
|
| Q |
295 |
nnnctatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagttggaagagtgtgtgcagactaagcata |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
25218126 |
aaactatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagctggaagaatttgtgcagactaagcata |
25218225 |
T |
|
| Q |
395 |
tgggtggacttggagtacaaaatttggtgttattcaacgtggctttgctcaccgatatggagatggatgtacctctgtgaggaggaagcggtttggcatc |
494 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
25218226 |
tgggtggacttggagtacaaaattaggagttattcaacgtggctttgctcaccgatatggagatggaggtacctttgtgaggaggaagcggtttggcatc |
25218325 |
T |
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| Q |
495 |
actta |
499 |
Q |
| |
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|||| |
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|
| T |
25218326 |
cctta |
25218330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 96 - 499
Target Start/End: Original strand, 25282081 - 25282485
Alignment:
| Q |
96 |
tttttgtactgtctaacttacatccaaaaataagtagattatcaacactggaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25282081 |
tttttgtactgtctaacttacatccaaaaataagtagattattaacattgtaaaaatgttttaataggcaatgaaattcctttataactttcacaagctt |
25282180 |
T |
|
| Q |
196 |
aattagacaactgatgataatatgtgtattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcatc-ccnnnn |
294 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
25282181 |
aattagacaactgatgataatatgtgcattctcaataactcctcacaattctttcttctttccaaaacttacatgtttgtcatcatcttcgtcacaaaaa |
25282280 |
T |
|
| Q |
295 |
nnnctatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagttggaagagtgtgtgcagactaagcata |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
25282281 |
aaactatgaatagattggtaatacattgtgaataacaaaaagattgcaccataaaaagattgcttggactagctggaagaatttgtgcagactaagcata |
25282380 |
T |
|
| Q |
395 |
tgggtggacttggagtacaaaatttggtgttattcaacgtggctttgctcaccgatatggagatggatgtacctctgtgaggaggaagcggtttggcatc |
494 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
25282381 |
tgggtggacttggagtacaaaattaggagttattcaacgtggctttgctcaccgatatggagatggaggtacctttgtgaggaggaagcggtttggcatc |
25282480 |
T |
|
| Q |
495 |
actta |
499 |
Q |
| |
|
|||| |
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|
| T |
25282481 |
cctta |
25282485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 37158858 - 37158811
Alignment:
| Q |
243 |
attctttcttctttccaaaacttacatgtttgtcatcatcttcatccc |
290 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||||||||||||||||||| |
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| T |
37158858 |
attctttcttcttgccgaaaattacatgattgtcatcatcttcatccc |
37158811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 43392189 - 43392149
Alignment:
| Q |
188 |
acaagcttaattagacaactgatgataatatgtgtattctc |
228 |
Q |
| |
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|||||||||||||||| | ||||||||||||||| |||||| |
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| T |
43392189 |
acaagcttaattagaccattgatgataatatgtgcattctc |
43392149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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