View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0069_low_6 (Length: 476)
Name: NF0069_low_6
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 20996388 - 20995959
Alignment:
| Q |
14 |
gacatcatcaccttcagcacactctgtctatgggtcaattcaataaacaagaaaagttcatacttaaacag-acaaaaattcatcacatcactaatatac |
112 |
Q |
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||||||| |||||| ||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| |||||| |
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| T |
20996388 |
gacatcaacaccttgagcacactccgtctatgggtcaattcaat------gaaaagttcaaacttaaactccacaaaaattcatcacatcactgatatac |
20996295 |
T |
|
| Q |
113 |
atacacaaattcaatattccatttatttatttcaatttatataaccttacaatgtatgaatttgcatcaacaattatacaaacaaaaaatacaatgtact |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20996294 |
atacacaaattcaatattccatttatttatttcaatttatgtaacattacaatgtatgaatttacatcaacaattatacaaacaaaaaatacaatgtact |
20996195 |
T |
|
| Q |
213 |
agttccaaaccctacaatttctagatgaagacgtgatattaaacatgactacctcggatcctccccaatgtatccactttaggagtaaaagatgaagcac |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20996194 |
agttccaaaccctacaatttctagatgaagacgtgatattaaacatgactacctcggatcctccccaatgtatccactttaggagtaaaagatgaagcac |
20996095 |
T |
|
| Q |
313 |
aacggttccacattcacgctccagggatcactgttagggaagaattcattcacagctagaaaaggtgacgggacatcccaccacttatgagaaaggcttc |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20996094 |
aacggttccacattcacgctccagggatcactgtcagggaagaattcattcacagctagaaaaggtgacgggacatcccacgacttatgagaaaggcttc |
20995995 |
T |
|
| Q |
413 |
atcagttgtttttaaacaaacccaagagtttttctt |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
20995994 |
atcagttgtttttaaacaaacccaagagtttttctt |
20995959 |
T |
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