View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0069_low_9 (Length: 392)
Name: NF0069_low_9
Description: NF0069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0069_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 28 - 377
Target Start/End: Original strand, 7753941 - 7754288
Alignment:
| Q |
28 |
cagaaggttgatggcttccccttcatgaattaggagtctgtgagagttacgataaagtctgactttatatatagaccctctctcatcgcataaattgaaa |
127 |
Q |
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| T |
7753941 |
cagaaggttgatggcttccccttcatgaattaggagtctgtgagagttacgataaagtctgactttatatatagaccctctctcatcgcataaattgaaa |
7754040 |
T |
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| Q |
128 |
ctaacactgaaaaactaaattaaataaagtggtcatggtggtaccagtaagatataaagtctgtggttttaccatattaatcaagaaaatcacaattgta |
227 |
Q |
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| T |
7754041 |
ctaacactgaaaaactaaattaaataaattggtcatggtggtaccagtaagatataaagtctgtggttttaccatattaatcaagaaaatcacaattgta |
7754140 |
T |
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| Q |
228 |
aatagaatagcacctaaacacaatgatacctctagctagaacactatgggaaaaatctaacagtttggtgtacataaattcccctagcacattattttat |
327 |
Q |
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| T |
7754141 |
aatagaatagcacctaaacacaatgatacctctagctagaacac--tgggaaaaatctaacagtttggtgtacataaattcccctagcacattattttat |
7754238 |
T |
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| Q |
328 |
caaaataagaaagaaaattccatagaactttctaatttattccatcatat |
377 |
Q |
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| T |
7754239 |
caaaataagaaagaaaattccatagaactttctaatttattccatcatat |
7754288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 10969938 - 10969872
Alignment:
| Q |
298 |
tacataaattcccctagcacattattttatcaaaataagaaagaaaattccatagaactttctaatt |
364 |
Q |
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| T |
10969938 |
tacatgaatttccctctcacattattttatcaaaataagaaagaaaatcccatgggacattctaatt |
10969872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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