View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0070-INSERTION-4 (Length: 222)
Name: NF0070-INSERTION-4
Description: NF0070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0070-INSERTION-4 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42574629 - 42574408
Alignment:
| Q |
1 |
tgttaggtaacaattcaagagctaaaacgctagacttactctataaataccaactcgtgatattggtccatatacgtgtactggtgaaatgttttcataa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42574629 |
tgttaggtaacaattcaagagctaaaatgctagacttactctataaataccaactcgtgatattggtccatatacgtgtactggtgaaatgttttcataa |
42574530 |
T |
|
| Q |
101 |
ataccgtttcgtctgttggagaagaagactgtcgacgaagatgctaagttcaaagataatttaacgtcatcaaacaaaatttaaacttgtaagtgattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42574529 |
ataccgtttcgtctgttggagaagaagactgtcgacgaagatgctaagttcaaagataatttaacgtcatcaaacaaaatttaaacttgtaagtgattaa |
42574430 |
T |
|
| Q |
201 |
atccatgtcttttcaaacaaaa |
222 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
42574429 |
atacatgtcttttcaaacaaaa |
42574408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1073 - 1294
Alignment:
| Q |
1 |
tgttaggtaacaattcaagagctaaaacgctagacttactctataaataccaactcgtgatattggtccatatacgtgtactggtgaaatgttttcataa |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1073 |
tgttaggtaacaattcaagagctaaaatgctagacttactctataaataccaactcgtgatattggtccatatacgtgtactggtgaaatgttttcataa |
1172 |
T |
|
| Q |
101 |
ataccgtttcgtctgttggagaagaagactgtcgacgaagatgctaagttcaaagataatttaacgtcatcaaacaaaatttaaacttgtaagtgattaa |
200 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1173 |
ataccgtttcgtctgttggagaataagattgtcgacgaagatgctaagttcaaagataatttaacgtcatcaaacaaaatttaaacttgtaagtgattaa |
1272 |
T |
|
| Q |
201 |
atccatgtcttttcaaacaaaa |
222 |
Q |
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|| ||||||||||||||||||| |
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| T |
1273 |
atacatgtcttttcaaacaaaa |
1294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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