View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0070-INSERTION-5 (Length: 586)
Name: NF0070-INSERTION-5
Description: NF0070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0070-INSERTION-5 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 92 - 586
Target Start/End: Complemental strand, 20976576 - 20976082
Alignment:
| Q |
92 |
aattctttctttctagaatctcttgttcattctcacaagtctttggtaacaagtcaatttttatcaccaatcaataaaatatcaaagttctcaacaaaaa |
191 |
Q |
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| T |
20976576 |
aattctttctttctagagtctcttgttcattctcacaagtctttggtaacaagtcaatttttatcaccaatcaataaaatatcaaagttctcaacaaaaa |
20976477 |
T |
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| Q |
192 |
tgctgcaacatgattccatagactcctagagactgatcaagagaaccaaaatcagataaagattggttcagtttagcacaaagactccttaattaagcaa |
291 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20976476 |
tgctgcaacatgattccatagactcccagagactgatcaagagaaccaaaatcagatagagattggttcagtttagtacaaagactccttaattaagcaa |
20976377 |
T |
|
| Q |
292 |
ccattttactaattcaacatcacaataacttgtccaccccctgcacagatcaaagacaataagttcttcaaggtgcatatcaaaatgattaaccattcaa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20976376 |
ccattttactaattcaacatcacaataacttgtccacctcctgcacagatcaaagacaataagttcttcaaggtgcatatcaaaatgattaaccattcaa |
20976277 |
T |
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| Q |
392 |
cctgaagaggcaacacaaattattatttatgagaaaacaatcaactctgaaaataatgatgagaggcattacgcgatggatataattcaaatcgttctcg |
491 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20976276 |
cctgaagaggcaacacaaattattatctatgagaaaacaatcaactctgaaaataatgatgagaggcattacgcgatggatataattcaaatcgttctcg |
20976177 |
T |
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| Q |
492 |
cttaagattgtaaatgacaaaaatgactcaactgtcataatagtaatgttatagagcagaaaaataatgctcttcaataattttaggattgtcat |
586 |
Q |
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| T |
20976176 |
cttaagattgtaaatgacaaaaatgactcaactgccataatagtaatgttatagagcagaaaaataatgctcttcaataattttaggattgtcat |
20976082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 20976086 - 20976000
Alignment:
| Q |
9 |
gtcattcccttgaaattccacaatgtctttgcaaaagctaacaataaaaagatttccggttagaataagttattatggacaagaatt |
95 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20976086 |
gtcattcccttgaaattccacaatgcctttgtaaaagctaacaataaaaagatctccggttagaataagttattatggacaagaatt |
20976000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 32005734 - 32005692
Alignment:
| Q |
218 |
tagagactgatcaagagaaccaaaatcagataaagattggttc |
260 |
Q |
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| T |
32005734 |
tagagactgatcaagagaaccaaaatcagatagagattggttc |
32005692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 525 - 586
Target Start/End: Complemental strand, 32000943 - 32000882
Alignment:
| Q |
525 |
gtcataatagtaatgttatagagcagaaaaataatgctcttcaataattttaggattgtcat |
586 |
Q |
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||||||| ||||||| | || ||||||||||||||| ||| |||| |||||||||||||||| |
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| T |
32000943 |
gtcataacagtaatgctctatagcagaaaaataatgttctccaatgattttaggattgtcat |
32000882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 32001313 - 32001268
Alignment:
| Q |
164 |
aataaaatatcaaagttctcaacaaaaatgctgcaacatgattcca |
209 |
Q |
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||||||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
32001313 |
aataaaatatcaaagttctcagcacaaaggctgcaacatgattcca |
32001268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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