View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0070-INSERTION-6 (Length: 174)
Name: NF0070-INSERTION-6
Description: NF0070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0070-INSERTION-6 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 3e-65; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5183833 - 5184006
Alignment:
| Q |
1 |
tgtcttacaacaacctttctggaacaccacctagcacaagacagtttgcaaattttgatgaggacaactacagaggtaatcccggtctgtgtggacaact |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| || |||||||| |
|
|
| T |
5183833 |
tgtcatacaacaacctttctggaacaccacctagcacaagacaatttgcaaactttgatgagtacaactacagaggtaatcccggtctttgcggacaact |
5183932 |
T |
|
| Q |
101 |
ccctaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaaggaaacca |
174 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
5183933 |
cctaaatcaaaagtgtgaacgtgtcgagtcttcaccttcatcacaatccaatgacaatggagaaaagcaaacca |
5184006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 174
Target Start/End: Original strand, 5215382 - 5215550
Alignment:
| Q |
6 |
tacaacaacctttctggaacaccacctagcacaagacagtttgcaaattttgatgaggacaactacagaggtaatcccggtctgtgtggacaactcccta |
105 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||||||||| | |||||||||||||| |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
5215382 |
tacaacaacttttctggaacaccacctagtacaggacagtttggaggttttgatgaggacagttacagaggtaatcccggtctttgtggaccactcctct |
5215481 |
T |
|
| Q |
106 |
atcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaaggaaacca |
174 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
5215482 |
atcaaaagtgtgaacgtgtcgagtcttcaccttcatcacaatccaatgacaatggagaaaaggaaacca |
5215550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 5161550 - 5161721
Alignment:
| Q |
1 |
tgtcttacaacaacctttctggaacaccacctagcacaagacagtttgcaaattttgatgaggacaactacagaggtaatcccggtctgtgtggacaact |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| |||||||||||| || | |||||||| ||||||||||||||||||||| |||||| ||| |
|
|
| T |
5161550 |
tgtcatacaacaacctttctggaacaccacctagtacaggacagtttgcaaccttcgttgaggacagctacagaggtaatcccggtctttgtggatcact |
5161649 |
T |
|
| Q |
101 |
ccctaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaaggaaac |
172 |
Q |
| |
|
|| | | |||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| |
|
|
| T |
5161650 |
cctcgaccgaaagtgtgaaggtgtcaagtcttcaccatcatcacaatccaatgacaatgaagaagaggaaac |
5161721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 5197232 - 5197403
Alignment:
| Q |
1 |
tgtcttacaacaacctttctggaacaccacctagcacaagacagtttgcaaattttgatgaggacaactacagaggtaatcccggtctgtgtggacaact |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | | | ||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||| ||| |
|
|
| T |
5197232 |
tgtcatacaacaacctttctggaacaccacctagtataggccagtttgcaaactttgatgaggataactacagaggtaatcccagtctttgtggaccact |
5197331 |
T |
|
| Q |
101 |
ccctaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaaggaaac |
172 |
Q |
| |
|
|| | || |||||||||||||||| || || |||| ||||| |||||||||||||||||| || ||||||| |
|
|
| T |
5197332 |
cctcagtcgaaagtgtgaacgtgtcgagcctccaccatcatcccaatccaatgacaatgaagaagaggaaac |
5197403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 4855537 - 4855366
Alignment:
| Q |
1 |
tgtcttacaacaacctttctggaacaccacctagcacaagacagtttgcaaattttgatgaggacaactacagaggtaatcccggtctgtgtggacaact |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||| ||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
4855537 |
tgtcatacaacaacctttctggaacaccacctagtacaggacagtttgcaaccttcattgaggacagctacagaggtaatcccgatctttgtggaccact |
4855438 |
T |
|
| Q |
101 |
ccctaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaaggaaac |
172 |
Q |
| |
|
|| | | |||||||||| ||| |||||||||||| |||||||||||||||||||||||| || ||||||| |
|
|
| T |
4855437 |
cctcgaccgaaagtgtgaaggtgccaagtcttcaccatcatcacaatccaatgacaatgaagaagaggaaac |
4855366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 4841031 - 4840858
Alignment:
| Q |
1 |
tgtcttacaacaacctttctggaacaccacctagcacaagacagtttgcaaattttgatgaggacaactacagaggtaatcccggtctgtgtggacaact |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||| |||| |||| | |||| |||||| ||||||| ||||||||| ||||| ||||||| | | |
|
|
| T |
4841031 |
tgtcatacaacaacctctctggaacaccacctagtacaggacaatttggaggctttgttgaggaaaactacataggtaatcctggtctttgtggaccatt |
4840932 |
T |
|
| Q |
101 |
ccctaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaaggaaacca |
174 |
Q |
| |
|
|| |||| ||||||||||| |||| |||||||| | |||||||||||||||||| | | | |||||||||||| |
|
|
| T |
4840931 |
cctcaatcgaaagtgtgaacatgtcgagtcttcagcatcatcacaatccaatgacgacggagaaaaggaaacca |
4840858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5174491 - 5174664
Alignment:
| Q |
1 |
tgtcttacaacaacctttctggaacaccacctagcacaagacagtttgcaaattttgatgaggacaactacagaggtaatcccggtctgtgtggacaact |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| |||| |||| | |||| |||||| ||||||| ||||||||| ||||| ||||||| | | |
|
|
| T |
5174491 |
tgtcatacaacaacctttctggaacaccacctagtacaggacaatttggaggctttgttgaggaaaactacataggtaatcctggtctttgtggaccatt |
5174590 |
T |
|
| Q |
101 |
ccctaatcaaaagtgtgaacgtgtcaagtcttcaccttcatcacaatccaatgacaatgaacaaaaggaaacca |
174 |
Q |
| |
|
| |||| ||||||||||| |||| |||||||| | |||||||||||||||||| | | | |||||||||||| |
|
|
| T |
5174591 |
cgtcaatcgaaagtgtgaacatgtcgagtcttcagcatcatcacaatccaatgacgacggagaaaaggaaacca |
5174664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7143696 - 7143729
Alignment:
| Q |
1 |
tgtcttacaacaacctttctggaacaccacctag |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7143696 |
tgtcttacaacaacctttctggaacaccacctag |
7143729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 706 times since January 2019
Visitors: 1282