View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0070-INSERTION-7 (Length: 521)

Name: NF0070-INSERTION-7
Description: NF0070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0070-INSERTION-7
NF0070-INSERTION-7
[»] chr7 (2 HSPs)
chr7 (8-388)||(37233736-37234104)
chr7 (385-521)||(37234100-37234236)
[»] chr6 (4 HSPs)
chr6 (343-377)||(2732963-2732997)
chr6 (343-377)||(33735435-33735469)
chr6 (343-371)||(21869896-21869924)
chr6 (315-371)||(32136316-32136372)
[»] chr5 (2 HSPs)
chr5 (343-377)||(11257755-11257789)
chr5 (343-371)||(41399570-41399598)
[»] chr4 (4 HSPs)
chr4 (316-371)||(20989525-20989582)
chr4 (342-371)||(4762550-4762579)
chr4 (343-371)||(18968308-18968336)
chr4 (343-371)||(34581612-34581640)
[»] chr8 (2 HSPs)
chr8 (343-376)||(33120560-33120593)
chr8 (343-376)||(45371098-45371131)
[»] chr3 (2 HSPs)
chr3 (342-371)||(34363256-34363285)
chr3 (343-376)||(53855744-53855777)
[»] chr2 (3 HSPs)
chr2 (343-376)||(33971673-33971706)
chr2 (343-371)||(12749997-12750025)
chr2 (343-371)||(44460364-44460392)
[»] chr1 (3 HSPs)
chr1 (344-377)||(6025971-6026004)
chr1 (342-371)||(32721454-32721483)
chr1 (343-387)||(19392216-19392260)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 37234104 - 37233736
Alignment:
Q  8 aatattaagtgttggcaaggagaggttactattgttccggaaaaatggtctccttttgatgttgtgtttctttattttttgcctgctttgccctttaaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37234104 aatattaagtgttggcaaggagaggttactattgttccggaaaaatggtctccttttgatgttgtgtttctttattttttgcctgctttgccctttaaac 37234005  T
Q  108 ttgaggatgttcttggttctttggctccaaaatgttcacctggttagtttttcttatctgctttagaa--ttttgttgttagtttagtattggaatagaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  37234004 ttgaggatgttcttggttctttggctccaaaatgttcacctggttagtttttcttatctgctttagaatgttttgttgttagtttactattggaatagaa 37233905  T
Q  206 aattgttcattcatgtttatgtcatgtttatgtccgtttcattgcatattgaaactgcaatgttgtccatcgtatattgcagaaaataatggtttttagt 305  Q
    ||||||||||           ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |    
T  37233904 aattgttcat-----------tcatgtttatgtcggtttcattgcatattgaaactgcaatgttgtccatagtatattgcagaaaataatggtttt---t 37233819  T
Q  306 acnnnnnnncaaattccgctacacacaagtgctataggctatttgacaacattttgtactaaataggatatcctgaaacaatt 388  Q
    ||       ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37233818 actttttttcaaattccgctacacacaagtgccataggctatttgacaacattttgtactaaataggatatcctgaaacaatt 37233736  T

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Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 385 - 521
Target Start/End: Complemental strand, 37234236 - 37234100
Alignment:
Q  385 aattcaagggttttggtttcaagtggttctgaagagtttgtggattgtttagttggtggttctaaattcaagtctatgcttgttcttcatgactcacttt 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37234236 aattcaagggttttggtttcaagtggttctgaagagtttgtggattgtttagttggtggttctaaattcaagtctatgcttgttcttcatgactcacttt 37234137  T
Q  485 tgatattggctcttcttattgagaaatatgataatat 521  Q
    |||||||||||||||||||||||||||||||||||||    
T  37234136 tgatattggctcttcttattgagaaatatgataatat 37234100  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 2732997 - 2732963
Alignment:
Q  343 gctatttgacaacattttgtactaaataggatatc 377  Q
    ||||||||||||||||||||||||||||| |||||    
T  2732997 gctatttgacaacattttgtactaaatagcatatc 2732963  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 33735435 - 33735469
Alignment:
Q  343 gctatttgacaacattttgtactaaataggatatc 377  Q
    ||||||||||||||||||||||||||||| |||||    
T  33735435 gctatttgacaacattttgtactaaatagcatatc 33735469  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 21869924 - 21869896
Alignment:
Q  343 gctatttgacaacattttgtactaaatag 371  Q
    |||||||||||||||||||||||||||||    
T  21869924 gctatttgacaacattttgtactaaatag 21869896  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 32136316 - 32136372
Alignment:
Q  315 caaattccgctacacacaagtgctataggctatttgacaacattttgtactaaatag 371  Q
    ||||||||||||||||  |||| ||||| |  |||||||||||||| ||||||||||    
T  32136316 caaattccgctacacaacagtgttatagccactttgacaacattttatactaaatag 32136372  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 11257789 - 11257755
Alignment:
Q  343 gctatttgacaacattttgtactaaataggatatc 377  Q
    ||||||||||||||||||||||||||||| |||||    
T  11257789 gctatttgacaacattttgtactaaatagcatatc 11257755  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 371
Target Start/End: Original strand, 41399570 - 41399598
Alignment:
Q  343 gctatttgacaacattttgtactaaatag 371  Q
    |||||||||||||||||||||||||||||    
T  41399570 gctatttgacaacattttgtactaaatag 41399598  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 20989582 - 20989525
Alignment:
Q  316 aaattccgctacacacaagtgctatag--gctatttgacaacattttgtactaaatag 371  Q
    ||||||||||| |||  || |||||||  |||||||||||||||||||||||||||||    
T  20989582 aaattccgctatacaatagggctatagccgctatttgacaacattttgtactaaatag 20989525  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 371
Target Start/End: Original strand, 4762550 - 4762579
Alignment:
Q  342 ggctatttgacaacattttgtactaaatag 371  Q
    ||||||||||||||||||||||||||||||    
T  4762550 ggctatttgacaacattttgtactaaatag 4762579  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 18968336 - 18968308
Alignment:
Q  343 gctatttgacaacattttgtactaaatag 371  Q
    |||||||||||||||||||||||||||||    
T  18968336 gctatttgacaacattttgtactaaatag 18968308  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 34581640 - 34581612
Alignment:
Q  343 gctatttgacaacattttgtactaaatag 371  Q
    |||||||||||||||||||||||||||||    
T  34581640 gctatttgacaacattttgtactaaatag 34581612  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 33120560 - 33120593
Alignment:
Q  343 gctatttgacaacattttgtactaaataggatat 376  Q
    ||||||||||||||||||||||||||||| ||||    
T  33120560 gctatttgacaacattttgtactaaatagcatat 33120593  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 45371098 - 45371131
Alignment:
Q  343 gctatttgacaacattttgtactaaataggatat 376  Q
    ||||||||||||||||||||||||||||| ||||    
T  45371098 gctatttgacaacattttgtactaaatagcatat 45371131  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 371
Target Start/End: Complemental strand, 34363285 - 34363256
Alignment:
Q  342 ggctatttgacaacattttgtactaaatag 371  Q
    ||||||||||||||||||||||||||||||    
T  34363285 ggctatttgacaacattttgtactaaatag 34363256  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 53855744 - 53855777
Alignment:
Q  343 gctatttgacaacattttgtactaaataggatat 376  Q
    ||||||||||||||||||||||||||||| ||||    
T  53855744 gctatttgacaacattttgtactaaatagcatat 53855777  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 33971706 - 33971673
Alignment:
Q  343 gctatttgacaacattttgtactaaataggatat 376  Q
    |||||||||||||| |||||||||||||||||||    
T  33971706 gctatttgacaacaatttgtactaaataggatat 33971673  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 12750025 - 12749997
Alignment:
Q  343 gctatttgacaacattttgtactaaatag 371  Q
    |||||||||||||||||||||||||||||    
T  12750025 gctatttgacaacattttgtactaaatag 12749997  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 44460392 - 44460364
Alignment:
Q  343 gctatttgacaacattttgtactaaatag 371  Q
    |||||||||||||||||||||||||||||    
T  44460392 gctatttgacaacattttgtactaaatag 44460364  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 6025971 - 6026004
Alignment:
Q  344 ctatttgacaacattttgtactaaataggatatc 377  Q
    |||||||||||||||||||||||||||| |||||    
T  6025971 ctatttgacaacattttgtactaaatagcatatc 6026004  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 371
Target Start/End: Complemental strand, 32721483 - 32721454
Alignment:
Q  342 ggctatttgacaacattttgtactaaatag 371  Q
    ||||||||||||||||||||||||||||||    
T  32721483 ggctatttgacaacattttgtactaaatag 32721454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 19392260 - 19392216
Alignment:
Q  343 gctatttgacaacattttgtactaaataggatatcctgaaacaat 387  Q
    |||||||||||| |||||||||| ||||| ||||| |||||||||    
T  19392260 gctatttgacaatattttgtacttaatagtatatcgtgaaacaat 19392216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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