View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0070-INSERTION-9 (Length: 310)
Name: NF0070-INSERTION-9
Description: NF0070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0070-INSERTION-9 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 76 - 310
Target Start/End: Original strand, 22837575 - 22837809
Alignment:
| Q |
76 |
aaaaatatcaaagattggatttctacttctaaggttttgataaaagaaaggaaatatggcattcatgctcatgaagacaatgagactaaattaaaaagaa |
175 |
Q |
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| T |
22837575 |
aaaaatattaaagattggatttctacttttaaggttttgataaaagaaaggaaatatgacattcatgctcacagagacaatgagattaaattaaaaagaa |
22837674 |
T |
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| Q |
176 |
ggggtcatttatgcaacaaagtcggccaataattcagatttgaatgctttctgacattcgaatgcaaattcagacaactctgcataacatttcggcatcc |
275 |
Q |
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| T |
22837675 |
ggggtcatttatgcaacaaagttggccaataattgagttttgaatgctttctgacattcgagtgaaaattcagacaactccacataacatttcgccatcc |
22837774 |
T |
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| Q |
276 |
tttccacaagttattatgatctgaataacatgtct |
310 |
Q |
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| T |
22837775 |
tttctgcaagttattatgatccggataacatgtct |
22837809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 22814866 - 22814986
Alignment:
| Q |
79 |
aatatcaaagattggatttctacttctaaggttttgataaaagaaaggaaatatggcattcatgctcatgaagacaatgagactaaattaaaaagaaggg |
178 |
Q |
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| T |
22814866 |
aatatcaaagattgaatttctacttttaaggttttgataaaagaaagaaaatatgacattcatgctcatgaagacaatgatattaaattaaaaagaaggg |
22814965 |
T |
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| Q |
179 |
gtcatttatgcaacaaagtcg |
199 |
Q |
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| T |
22814966 |
gtcatttatgctacaaagtcg |
22814986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 22837806 - 22837867
Alignment:
| Q |
8 |
gtctttaatgggctagtcggttggtactgttatagaatgggccagcaagttttcacagaatt |
69 |
Q |
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| T |
22837806 |
gtctttaatgggctagtcggttggtactgttatagaatgggccagcaagttttcacggaatt |
22837867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 22827260 - 22827354
Alignment:
| Q |
214 |
tttgaatgctttctgacattcgaatgcaaattcagacaactctgcataacatttcggcatcctttccacaagttattatgatctgaataacatgt |
308 |
Q |
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| T |
22827260 |
tttgaatgctttgtgacattcgaatgagaatccagacaacaccactgaacatttcgccatgctttccgcaagttaatatgatctgaataacatgt |
22827354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 22815052 - 22815104
Alignment:
| Q |
11 |
tttaatgggctagtcggttggtactgttatagaatgggccagcaagttttcac |
63 |
Q |
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| T |
22815052 |
tttaatggtctggtcggtttgtactattatagaatgggtcaggaagttttcac |
22815104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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