View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0070_high_1 (Length: 626)
Name: NF0070_high_1
Description: NF0070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0070_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 49545438 - 49545921
Alignment:
| Q |
1 |
ttcgaaactgatgtgcttaacaaccttgttaaggagtgtgaggtgctactgaacattctttttaccaacaatgatagcccttcttgcccttgcacatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545438 |
ttcgaaactgatgtgcttaacaaccttgttaaggagtgtgaggtgctactgaacattctttttaccaacaatgatagcccttcttgcccttgcacatcaa |
49545537 |
T |
|
| Q |
101 |
ctagtgaggaaaatgaagaaaataaagagaagctgatgcaggttcctgaagaaattgctgaaattgaaaatatggagaatgtgctcatcaagctaacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545538 |
ctagtgaggaaaatgaagaaaataaagagaagctgatgcaggttcctgaagaaattgctgaaattgaaaatatggagaatgtgctcatcaagctaacttt |
49545637 |
T |
|
| Q |
201 |
atcagcattgcgtaccttggaagaaattcgcggtcaaagctcaacagtaagcattttctatttagtctttgtaattttgaaaggtgatacaactggtaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545638 |
atcagcattgcgtaccttggaagaaattcgcggtcaaagctcaacagtaagcattttctatttagtctttgtaattttgaaaggtgatacaactggtaca |
49545737 |
T |
|
| Q |
301 |
tgtatgagttttgctcatgtatgcggaatttttgcagaagcaaggggtaaaaactaaaacgtcaggtgaagcttgtggagacaaggaaaaggtagcacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545738 |
tgtatgagttttgctcatgtatgcggaatttttgcagaagcaaggggtaaaaactaaaacgtcaggtgaagcttgtggagacaaggaaaaggtagcacat |
49545837 |
T |
|
| Q |
401 |
tcatagaatggatcctgaagctactcctcttggctcttagtcaaaataatctgaaccgtctttaagagatatcttactattagcatcaatt |
491 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49545838 |
tcatagaatggatcctgaagctactc-------gtcttagtcaaaataatctgaaccgtctttaagagatatcttactattagcatcaatt |
49545921 |
T |
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