View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0070_high_3 (Length: 595)
Name: NF0070_high_3
Description: NF0070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0070_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 49545462 - 49544963
Alignment:
| Q |
1 |
ggttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaagtagtccaccagttcgcttatcgtgtttctttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545462 |
ggttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaagtagtccaccagttcgcttatcgtgtttctttat |
49545363 |
T |
|
| Q |
101 |
tatcttcactaaacctgcataaacattcatgatatataatctaataaatttctcttttcaaatgaattaaaaacacatacaagtcaacatttacattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
49545362 |
tatcttcactaaacctgcataaacattcatgatatataatctaataaatttctcttttcaaatgaattaaaaacacacacaagtcaacagttacattatt |
49545263 |
T |
|
| Q |
201 |
catgaatatatgactatatcagatcttagattagaatttagatcatgcctgtgtagttaagtgcactatagttctccaacaaaaccatctccccatggaa |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545262 |
catgaatatataactatatcagatcttagattagaatttagatcatgcctgtgtagttaagtgcactatagttctccaacaaaaccatctccccatggaa |
49545163 |
T |
|
| Q |
301 |
gtcaactatttccctccataatgacatcaactccacatctgaataatccatgaccctgtcaactctgtcttgcaactcctgcataaagaaaattacgaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545162 |
gtcaactatttccctccataatgacatcaactccaaatctgaataatccatgaccctgtcaactctgtcttgcaactcctgcataaagaaaattacgaaa |
49545063 |
T |
|
| Q |
401 |
catacaacatatgtcaaggccggaccaatacatattgaggcatacgacggatttaaaaataaggctacctatgtttatgttaccttccatttgatgatgt |
500 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49545062 |
catacaacatatgtcaaggctggaccaatacatattgaggcatacgacggatttaaaaataaggctacctatgtttatgttaccttccatttgatgatgt |
49544963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 2469838 - 2469923
Alignment:
| Q |
248 |
cctgtgtagttaagtgcactatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatgacatcaactc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||||||||||| || || ||||||||| |
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| T |
2469838 |
cctgtgtagttaagtgcactatagttctctaacaaaaccatctctccatgaaaatccactatttccctccctactgtcatcaactc |
2469923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 2469050 - 2469166
Alignment:
| Q |
3 |
ttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaagtagtccaccagttcgcttatcgtgtttctttatta |
102 |
Q |
| |
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|||||||||||||| ||| ||| || |||||||||| || ||||||||||| || || ||||||||| |||||||||||||||| | ||||||||||| |
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| T |
2469050 |
ttgttaagcacatcgattttgaagaatggctggttcaagacatcttggataaaaggtaaccgaagtagtgcaccagttcgcttatcatatttctttatta |
2469149 |
T |
|
| Q |
103 |
tcttcactaaacctgca |
119 |
Q |
| |
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|||| || ||||||||| |
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|
| T |
2469150 |
tcttaaccaaacctgca |
2469166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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