View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0070_low_5 (Length: 360)
Name: NF0070_low_5
Description: NF0070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0070_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 26578586 - 26578909
Alignment:
| Q |
14 |
agatcaaggaattaataagtataaattacattaggtattaggtaaaatcctattaaagtaacttggtaatttcaatatgaattatatacctgaagaagct |
113 |
Q |
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| T |
26578586 |
agatcaaggaattaataagtataaattacattaggtattaggtaaaatactattaaagtaacttggtaatttcaatatgaattatatacctgaagaagct |
26578685 |
T |
|
| Q |
114 |
gctggcttgtcagtgtttttaacagttctatacatctgcagaagccaaaagaaggacaattaagattataataataaatgagaagattttgcagttagta |
213 |
Q |
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| T |
26578686 |
gctggcttgtcagtgtttttaacagttctatacatctgcagaagccaaaagaaggacaattaagattataataataaatgagaaaattttgcagttagta |
26578785 |
T |
|
| Q |
214 |
tctacggatatcaatttcagtcgtccgatcttaaatcaatggtagtgattatttagttaaggtgtaatgtgaatctatc------gaccttaactcaatg |
307 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
26578786 |
tctacggctatcaatttcagtcgtctgatcttaaatcaatggtagcgattattttgttaaggtgtaatgtgaatctatcgaccttgaccttaactcaatg |
26578885 |
T |
|
| Q |
308 |
actgagatccaatccagagtgtcg |
331 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
26578886 |
actgagatccaatccagagtgtcg |
26578909 |
T |
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