View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0072_low_1 (Length: 504)

Name: NF0072_low_1
Description: NF0072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0072_low_1
NF0072_low_1
[»] chr5 (2 HSPs)
chr5 (89-473)||(25218329-25218717)
chr5 (89-473)||(25282484-25282872)


Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 89 - 473
Target Start/End: Complemental strand, 25218717 - 25218329
Alignment:
Q  89 atcatcagaattagcaaacggagatgagataaagagatggtcgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata 188  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25218717 atcatcagaattagcaaacggagatgagataaagagatggttgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata 25218618  T
Q  189 attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaagactaaaatcacctacc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25218617 attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaatactaaaatcacctacc 25218518  T
Q  289 catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25218517 catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa 25218418  T
Q  389 gcttgaaatatctacaccaaagtaagacgtttgaac----tattactgcactgacttgtagtgacccaattaccaaaggaattcccata 473  Q
    |||| |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25218417 gcttcaaatatctacaccaaagtaagacgtttgaactatatattactgcactgacttgtagtgacccaattaccaaaggaattcccata 25218329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 89 - 473
Target Start/End: Complemental strand, 25282872 - 25282484
Alignment:
Q  89 atcatcagaattagcaaacggagatgagataaagagatggtcgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata 188  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25282872 atcatcagaattagcaaacggagatgagataaagagatggttgcaactttcatcataatttaagcagaaaacacaaggaatgccaatgttataatcgata 25282773  T
Q  189 attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaagactaaaatcacctacc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25282772 attcctctcacctttagggcatccaaagttgcaattttctgttgaaacacagatagagaaaagtctaggaaatttatctttaatactaaaatcacctacc 25282673  T
Q  289 catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25282672 catctttgaagctagaagtgagagtcattcccatctcctatccgatgacgaatcgaattaacaaaccaatcctctcaatctggtatgcagcagtctaaaa 25282573  T
Q  389 gcttgaaatatctacaccaaagtaagacgtttgaac----tattactgcactgacttgtagtgacccaattaccaaaggaattcccata 473  Q
    |||| |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25282572 gcttcaaatatctacaccaaagtaagacgtttgaactatatattactgcactgacttgtagtgacccaattaccaaaggaattcccata 25282484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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