View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0072_low_2 (Length: 312)
Name: NF0072_low_2
Description: NF0072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0072_low_2 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 87 - 312
Target Start/End: Complemental strand, 26752993 - 26752768
Alignment:
| Q |
87 |
tcatcacaccccccaagattccaacaatgtccccttcaccatcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatcctt |
186 |
Q |
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| T |
26752993 |
tcatcacaccccccaagattccaacaatgtccccttcaccatcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatcctt |
26752894 |
T |
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| Q |
187 |
caccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnnnnnnccttcacagcaggtttctaccctgtaggacaaaatgcttattccttt |
286 |
Q |
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| T |
26752893 |
caccctctcagtagaaaaccctgaacaaaacatcatactctcccccaaaaaaaccttcacagcaggtttctaccctgtaggacaaaatgcttattccttt |
26752794 |
T |
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| Q |
287 |
gccatatggttcacccaacaacacaa |
312 |
Q |
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| T |
26752793 |
gccatatggttcacccaaaaacacaa |
26752768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 26700448 - 26700378
Alignment:
| Q |
242 |
ttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcacccaacaacacaa |
312 |
Q |
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| T |
26700448 |
ttcacagcaggtttctaccctgttggagaaaatgcttattcctttgctatatggttcacccaaaaacacaa |
26700378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 26677381 - 26677298
Alignment:
| Q |
136 |
cttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacat |
219 |
Q |
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| T |
26677381 |
cttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagacat |
26677298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 300
Target Start/End: Original strand, 26688709 - 26688873
Alignment:
| Q |
136 |
cttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnn |
235 |
Q |
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|||||| |||||||||||||| |||||||||||||||| | ||||| ||| |||||||||| ||||| || |||||| |||| ||| | || ||| |
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| T |
26688709 |
cttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaa |
26688808 |
T |
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| Q |
236 |
nnnnccttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcac |
300 |
Q |
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| T |
26688809 |
ggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgccatatggttcac |
26688873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 26700562 - 26700486
Alignment:
| Q |
128 |
tcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaa |
204 |
Q |
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||||||||||| || ||| |||||||||| ||||||| |||||| ||| | ||||| ||| |||||||||| ||||| |
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| T |
26700562 |
tcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaa |
26700486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 300
Target Start/End: Complemental strand, 26677247 - 26677217
Alignment:
| Q |
270 |
aaaatgcttattcctttgccatatggttcac |
300 |
Q |
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| T |
26677247 |
aaaatgcttattcctttgccatatggttcac |
26677217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 26738842 - 26738790
Alignment:
| Q |
260 |
cctgtaggacaaaatgcttattcctttgccatatggttcacccaacaacacaa |
312 |
Q |
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|||||||| ||||||||||||| || |||||||||||||| ||| ||||||| |
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| T |
26738842 |
cctgtaggcgaaaatgcttattcattcgccatatggttcactcaaaaacacaa |
26738790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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