View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0072_low_3 (Length: 294)
Name: NF0072_low_3
Description: NF0072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0072_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 25 - 288
Target Start/End: Original strand, 29662816 - 29663072
Alignment:
| Q |
25 |
tgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaaggttgtccatatgaatatgatgttgaagcatggggttttcatgagaattggt |
124 |
Q |
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| T |
29662816 |
tgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaaggttgtccatatgaata---------agcatggggttttcatgagaattggt |
29662906 |
T |
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| Q |
125 |
ccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattctcggtgaaaaccaaatctccatgaatcaaaaaatgcccgaaattg |
224 |
Q |
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| T |
29662907 |
ccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattctcggtgaaaaccaaatctccatgaatcaaaaaatgcccgaaattg |
29663006 |
T |
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| Q |
225 |
cgaaggatgtcaaggttcgagttgtggtgattggcatgaagtgga-gca-gcagagagggagtttc |
288 |
Q |
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| T |
29663007 |
cgaaggatgtcaaggttcgagttgtggtgattggcatgaagtggatgcaggcagagagggagtttc |
29663072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 255
Target Start/End: Complemental strand, 33201579 - 33201420
Alignment:
| Q |
96 |
tgaagcatggggttttcatgagaattggtccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattctcggtgaaaaccaaat |
195 |
Q |
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| T |
33201579 |
tgaagcatggggttttcatgcgaattggtccaatagagaatgcctatctctcaagtagcaagatgcctgggtatgtgtatgttctcggtgaaaacccata |
33201480 |
T |
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| Q |
196 |
ctccatgaatcaaaaaatgcccgaaattgcgaaggatgtcaaggttcgagttgtggtgat |
255 |
Q |
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| T |
33201479 |
tttcatgaatcagaaaatgcccaagattgccaaagatgtcaaggttcgagttgtggtgat |
33201420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 33201662 - 33201613
Alignment:
| Q |
25 |
tgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaagg |
74 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
33201662 |
tgttctgttccctgttgttttcaatgccgtgaccttcaagattttcaagg |
33201613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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