View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0072_low_6 (Length: 256)
Name: NF0072_low_6
Description: NF0072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0072_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 101 - 245
Target Start/End: Complemental strand, 37573586 - 37573435
Alignment:
| Q |
101 |
ctgcactgcacaaaacggctacagcagaagaaga---gacataacaaac----cattgtttactgctcactcactccctcgcacagctagctagctgtac |
193 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37573586 |
ctgcactgcacaaaacggctacagcagaagaagaagagacataacaaacaaaccattgtttactgctcactcactccctcgcacagctagctagctgtac |
37573487 |
T |
|
| Q |
194 |
tgtacgtacgtgtgtacaatctctctctaatatctccttaccacgtgtctct |
245 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37573486 |
tgtacgtacgtgtgtacaatctctctctaatctctccttaccacgtgtctct |
37573435 |
T |
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