View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0073_high_2 (Length: 315)

Name: NF0073_high_2
Description: NF0073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0073_high_2
NF0073_high_2
[»] chr2 (24 HSPs)
chr2 (30-304)||(2165829-2166094)
chr2 (209-304)||(2155873-2155968)
chr2 (213-293)||(22011353-22011433)
chr2 (148-234)||(27952316-27952402)
chr2 (150-234)||(27956154-27956238)
chr2 (150-234)||(2155972-2156056)
chr2 (150-234)||(22011441-22011525)
chr2 (150-234)||(31636342-31636426)
chr2 (150-234)||(31634109-31634193)
chr2 (30-73)||(2152685-2152728)
chr2 (209-295)||(31634020-31634105)
chr2 (209-295)||(31636253-31636338)
chr2 (177-234)||(15129395-15129452)
chr2 (181-234)||(21772380-21772433)
chr2 (209-300)||(27956242-27956332)
chr2 (171-234)||(33655633-33655696)
chr2 (177-234)||(36647298-36647355)
chr2 (209-300)||(33655538-33655629)
chr2 (209-288)||(44675310-44675389)
chr2 (209-300)||(27952406-27952496)
chr2 (177-234)||(8294583-8294641)
chr2 (196-234)||(33051623-33051661)
chr2 (177-234)||(28737911-28737968)
chr2 (171-234)||(5171605-5171669)
[»] scaffold0110 (3 HSPs)
scaffold0110 (150-300)||(46733-46882)
scaffold0110 (150-235)||(45262-45347)
scaffold0110 (209-298)||(45350-45438)
[»] chr8 (25 HSPs)
chr8 (150-291)||(18468598-18468737)
chr8 (209-304)||(23570490-23570585)
chr8 (209-304)||(23573489-23573584)
chr8 (209-304)||(6845243-6845337)
chr8 (150-234)||(22921850-22921934)
chr8 (163-235)||(23570588-23570660)
chr8 (150-234)||(6845341-6845425)
chr8 (150-234)||(22512046-22512130)
chr8 (150-234)||(22519346-22519430)
chr8 (150-234)||(22926648-22926732)
chr8 (150-234)||(42891664-42891748)
chr8 (209-304)||(18180771-18180865)
chr8 (209-304)||(22926736-22926830)
chr8 (148-234)||(37189871-37189957)
chr8 (177-234)||(42890397-42890454)
chr8 (209-300)||(22921938-22922028)
chr8 (243-304)||(26150596-26150657)
chr8 (179-234)||(2687747-2687803)
chr8 (163-222)||(22520812-22520871)
chr8 (209-268)||(42891752-42891811)
chr8 (177-235)||(2189748-2189806)
chr8 (209-295)||(22512134-22512219)
chr8 (209-291)||(22520887-22520968)
chr8 (209-300)||(37189778-37189867)
chr8 (171-234)||(16598254-16598318)
[»] chr7 (17 HSPs)
chr7 (209-299)||(859244-859334)
chr7 (209-299)||(1217248-1217338)
chr7 (150-234)||(13882686-13882770)
chr7 (150-234)||(13886159-13886243)
chr7 (149-234)||(859155-859240)
chr7 (149-234)||(1217159-1217244)
chr7 (207-304)||(13886274-13886370)
chr7 (209-304)||(13882774-13882868)
chr7 (156-234)||(1220446-1220524)
chr7 (209-295)||(31577271-31577356)
chr7 (209-291)||(1220528-1220603)
chr7 (180-223)||(4888715-4888758)
chr7 (172-234)||(27309636-27309699)
chr7 (250-304)||(5678340-5678394)
chr7 (250-304)||(5703392-5703446)
chr7 (163-223)||(1786699-1786760)
chr7 (163-216)||(29175780-29175833)
[»] chr3 (20 HSPs)
chr3 (209-299)||(3068963-3069053)
chr3 (209-294)||(3063825-3063910)
chr3 (211-304)||(53012932-53013025)
chr3 (209-304)||(43306760-43306855)
chr3 (209-294)||(43304048-43304133)
chr3 (150-234)||(5128914-5128998)
chr3 (149-234)||(43303959-43304044)
chr3 (150-234)||(43306672-43306756)
chr3 (245-304)||(41218710-41218769)
chr3 (150-234)||(3063737-3063821)
chr3 (209-280)||(4580493-4580563)
chr3 (209-300)||(5128820-5128910)
chr3 (246-304)||(25857697-25857756)
chr3 (150-215)||(3068875-3068940)
chr3 (209-278)||(40593531-40593598)
chr3 (169-295)||(45168338-45168465)
chr3 (209-280)||(19949933-19950003)
chr3 (245-304)||(39913352-39913412)
chr3 (209-280)||(20398488-20398558)
chr3 (171-225)||(52708858-52708913)
[»] chr6 (16 HSPs)
chr6 (212-295)||(29340897-29340980)
chr6 (150-234)||(3536039-3536123)
chr6 (150-234)||(3542250-3542334)
chr6 (209-304)||(3535941-3536035)
chr6 (209-304)||(3542152-3542246)
chr6 (150-234)||(30049921-30050005)
chr6 (169-234)||(30052208-30052273)
chr6 (154-234)||(29340810-29340890)
chr6 (209-300)||(30049827-30049917)
chr6 (209-300)||(30052114-30052204)
chr6 (213-295)||(3565652-3565733)
chr6 (177-234)||(33615530-33615588)
chr6 (248-293)||(19232241-19232286)
chr6 (147-202)||(29342061-29342116)
chr6 (209-302)||(11190408-11190498)
chr6 (179-222)||(1127271-1127315)
[»] chr4 (14 HSPs)
chr4 (209-304)||(22716564-22716659)
chr4 (209-304)||(13085180-13085274)
chr4 (209-304)||(22691217-22691312)
chr4 (209-304)||(22988558-22988653)
chr4 (171-234)||(6659351-6659414)
chr4 (209-295)||(6659418-6659503)
chr4 (213-295)||(13086227-13086308)
chr4 (148-234)||(19935492-19935577)
chr4 (246-295)||(4053062-4053111)
chr4 (151-234)||(7723665-7723746)
chr4 (209-295)||(9596857-9596942)
chr4 (182-234)||(21433594-21433647)
chr4 (261-289)||(24667609-24667637)
chr4 (258-294)||(34949126-34949162)
[»] chr1 (14 HSPs)
chr1 (209-304)||(13444076-13444171)
chr1 (150-234)||(13443988-13444072)
chr1 (149-234)||(50857443-50857528)
chr1 (209-304)||(13441687-13441782)
chr1 (149-234)||(8931225-8931310)
chr1 (209-278)||(50857532-50857600)
chr1 (209-309)||(8931121-8931221)
chr1 (209-295)||(12033639-12033724)
chr1 (171-217)||(13441627-13441673)
chr1 (209-279)||(40804591-40804660)
chr1 (196-225)||(10927206-10927235)
chr1 (209-278)||(12486314-12486381)
chr1 (199-227)||(8965803-8965831)
chr1 (177-222)||(43681478-43681525)
[»] chr5 (7 HSPs)
chr5 (149-234)||(40778785-40778870)
chr5 (151-234)||(21848966-21849049)
chr5 (209-280)||(19677219-19677289)
chr5 (209-300)||(40778874-40778964)
chr5 (195-234)||(19497349-19497388)
chr5 (177-227)||(22440870-22440920)
chr5 (177-225)||(492581-492630)
[»] scaffold0054 (2 HSPs)
scaffold0054 (178-234)||(37716-37772)
scaffold0054 (199-234)||(49327-49362)
[»] scaffold0240 (1 HSPs)
scaffold0240 (177-223)||(16063-16109)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 30 - 304
Target Start/End: Complemental strand, 2166094 - 2165829
Alignment:
Q  30 gttgaatcattcatttatttagaaccaagatagaatgagacgtcatactcgtccctacaaacttagaagcaactttgatttttcctcctcatnnnnnnng 129  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||       |    
T  2166094 gttgaatcattcatttatttagaactaagatagaatgagacgtcatactcgtccctacaa--------gcaactttgatttttcctcctcataaaaaa-g 2166004  T
Q  130 tgacatgtttatgtccttattgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatca 229  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||| |||||| ||||| |||||| |||||||||||||||||||| ||||||||||||    
T  2166003 tgacatgtttatgtccttattgacgcagtacgacagcgtagggttaacaagcgttaaacctagatagaaaagaacaagtttgcaagcaacaaacttatca 2165904  T
Q  230 aaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2165903 aaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 2165829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 2155968 - 2155873
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||||| ||||||| || ||||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  2155968 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcagaattgagagaaaagtcttgaatattattattgaataaaagtgtgtctct 2155873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 22011433 - 22011353
Alignment:
Q  213 aagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaa 293  Q
    ||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22011433 aagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaa 22011353  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 27952316 - 27952402
Alignment:
Q  148 attgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  27952316 attgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 27952402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 27956154 - 27956238
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||    
T  27956154 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatgaaaata 27956238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 2156056 - 2155972
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||| | ||||||    
T  2156056 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcgagcgacaaacttgtgaaaata 2155972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 22011525 - 22011441
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||||| | ||||||    
T  22011525 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagtgacaaacttgtgaaaata 22011441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 31636426 - 31636342
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| |||||||| |||||||||||||||||||| | ||||||    
T  31636426 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaactagtttgcaagcgacaaacttgtgaaaata 31636342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 31634193 - 31634109
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| ||| |||||||| |||||| |||||||||||||||| |||||||||||| | ||||||    
T  31634193 tgacgcagtacggaagcgtagggttagcaaacgctaaacctagatagaaaagaacaagtttgctagcgacaaacttgtgaaaata 31634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 2152728 - 2152685
Alignment:
Q  30 gttgaatcattcatttatttagaaccaagatagaatgagacgtc 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2152728 gttgaatcattcatttatttagaaccaagatagaatgagacgtc 2152685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 31634105 - 31634020
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    ||||||||||||||| ||||||||| || | |||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  31634105 ttgcaagcgacaaacctatcaaaat-aagggtttcggaatccaccagaaattgagagaaaa-tctcaaatattattaatgaataaaaa 31634020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 31636338 - 31636253
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    ||||||||||||||| ||||||||| || | || | |||||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  31636338 ttgcaagcgacaaacctatcaaaat-aagggttccggaatccaccagaaattgagagaaaa-tcttgaatattattaatgaataaaaa 31636253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 15129452 - 15129395
Alignment:
Q  177 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||| | ||||||    
T  15129452 caagcgctaaacctagatagaaaagaacaagttcgcaagcgacaaacttgtgaaaata 15129395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 21772433 - 21772380
Alignment:
Q  181 cgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||| ||||||    
T  21772433 cgctaaacttagattgaaaaaaacaagtttgcaagcgacaaacttatgaaaata 21772380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 27956242 - 27956332
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    ||||||||||||||| ||| |||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||||    
T  27956242 ttgcaagcgacaaacctatgaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgt 27956332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 33655696 - 33655633
Alignment:
Q  171 ggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||| |||||||||||| |||||| ||||  ||||||||||||||||||||||| | ||||||    
T  33655696 ggttagcaagcgctaaacctagatagaaaaatacaagtttgcaagcgacaaacttgtgaaaata 33655633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 36647355 - 36647298
Alignment:
Q  177 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||| | |||  ||||||||||||||||||||||||||||| | ||||||    
T  36647355 caagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 36647298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 33655629 - 33655538
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    |||||| |||||||| |||||||||||  |||| | |||||||||| |||||||||||||| ||||||||| | ||| ||||| |||| ||||    
T  33655629 ttgcaaacgacaaacctatcaaaataagggtttccggaatccaccagaaattgagagaaaa-tctcgaataattttattgaatgaaaaagtgt 33655538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 44675310 - 44675389
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagag-aaaagtctcgaatattattaatga 288  Q
    |||||||||||| || ||||||| |||  |||||| |||||||||| ||||||||| |||||| ||||||| |||||||||    
T  44675310 ttgcaagcgacatacctatcaaa-taagggttttcggaatccaccagaattgagagaaaaagtttcgaatactattaatga 44675389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 27952406 - 27952496
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    ||||||||||||||| | | |||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||||    
T  27952406 ttgcaagcgacaaacctttgaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgt 27952496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 8294641 - 8294583
Alignment:
Q  177 caagcgctaaacttagataaaa-aagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||| |||||||||||||| || ||||||| ||||||||||||||||||| | ||||||    
T  8294641 caagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaacttgtaaaaata 8294583  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 33051661 - 33051623
Alignment:
Q  196 aaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  33051661 aaaaagaacaagtttgcaagcgacaaacttttgaaaata 33051623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 28737968 - 28737911
Alignment:
Q  177 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||| ||||||| |||||  |||||| |||||||||||||||||||||| | ||||||    
T  28737968 caagtgctaaacctagattgaaaagagcaagtttgcaagcgacaaacttttgaaaata 28737911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 5171605 - 5171669
Alignment:
Q  171 ggttatcaagcgctaaacttagataaaaaaga-acaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||| |||||||||||  |||||  |||||| ||||||||||||||||||||||| | ||||||    
T  5171605 ggttaacaagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaata 5171669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 300
Target Start/End: Original strand, 46733 - 46882
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataaatgttttcagaatc 249  Q
    |||||||||||  |||| |||||| | |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| || | || | |||||    
T  46733 tgacgcagtacggaagcgtagggtgagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatcaaaattaa-ggttccggaatc 46831  T
Q  250 cacc-aaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  46832 caccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgt 46882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 45262 - 45347
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataa 235  Q
    |||| ||||||  |||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||    
T  45262 tgacacagtacggaagcgtagggttagcaagcgctaaaattagataagaaagaacaagtttgcaagcgacaaacttatgaaaataa 45347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 45350 - 45438
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatgt 298  Q
    ||||||||||||||| |||||||||||  |||  |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  45350 ttgcaagcgacaaacctatcaaaataagggttc-cagaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaaatgt 45438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 291
Target Start/End: Complemental strand, 18468737 - 18468598
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataaatgttttcagaatc 249  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||| || ||||||||||| ||||||||||||||||| | |||||  | | || | |||||    
T  18468737 tgacgcagtacagaagca-agggttagcaagcgctaaacctaggtagaaaagaacaagcttgcaagcgacaaacttgtgaaaat--agggttccggaatc 18468641  T
Q  250 cacca-aaattgagagaaaagtctcgaatattattaatgaata 291  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  18468640 caccagaaattgagagaaaagtctcgaatattattaatgaata 18468598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 23570585 - 23570490
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||| |||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||    
T  23570585 ttgcaagcgacaaacctatcaaaataagggtttccagaatgcaccagaattgagagaaaagtctcgaatattatttatgaataaaagtgtgcctct 23570490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 23573584 - 23573489
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||| |  |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  23573584 ttgcaagcgacaaacctatcaaaataagggtttccgaaatccacctaaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctct 23573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 6845337 - 6845243
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaa-ttgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||| | ||||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  6845337 ttgcaagcgacaaacctatcaaaataagggttt-cggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaatcaaaaagtgtctct 6845243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 22921850 - 22921934
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| | ||||||    
T  22921850 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgcaagcgacaaacttgtgaaaata 22921934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 23570660 - 23570588
Alignment:
Q  163 aagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataa 235  Q
    |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | |||||||    
T  23570660 aagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataa 23570588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 6845425 - 6845341
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| |||||||||||||| ||||||| |||||| | ||||||    
T  6845425 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttacaagcgataaacttgtgaaaata 6845341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 22512046 - 22512130
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||  |||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||| | ||||||    
T  22512046 tgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 22512130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 22519346 - 22519430
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||  |||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||| | ||||||    
T  22519346 tgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 22519430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 22926648 - 22926732
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||| |||||  |||| ||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  22926648 tgacgtagtacggaagcgtagggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 22926732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 42891664 - 42891748
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||| |||  |||| ||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  42891664 tgacgcaatacggaagcgtagggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 42891748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 18180771 - 18180865
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||| |||||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||| ||||    
T  18180771 ttgcaagcgacaaacctatcaaaataagggtttccagaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgcctct 18180865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 22926736 - 22926830
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  ||||   |||||||||| ||||||||||||| ||||||||||| ||| ||||| ||| |||||||||    
T  22926736 ttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaa-tctcgaatatttttattgaattaaattgtgtctct 22926830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 37189957 - 37189871
Alignment:
Q  148 attgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||||  |||| |||||||| ||||| |||||  |||||| ||||||| ||||||||||||||||||||| | ||||||    
T  37189957 attgacgcagtacggaagcttagggttagcaagctctaaaactagatagaaaagaataagtttgcaagcgacaaacttgtgaaaata 37189871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 42890454 - 42890397
Alignment:
Q  177 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  42890454 caagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 42890397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 22921938 - 22922028
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||||    
T  22921938 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaggtgt 22922028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 26150657 - 26150596
Alignment:
Q  243 cagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| ||| ||||    
T  26150657 cagaatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaaagtgcctct 26150596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 2687803 - 2687747
Alignment:
Q  179 agcgctaaacttagata-aaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||    
T  2687803 agcgctaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 2687747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 22520812 - 22520871
Alignment:
Q  163 aagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaa 222  Q
    |||| |||||||| |||||||||||| ||| || |||||| |||||||||||||||||||    
T  22520812 aagcgtagggttagcaagcgctaaacctaggtagaaaagatcaagtttgcaagcgacaaa 22520871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 42891752 - 42891811
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaa 268  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| |||||||||||||    
T  42891752 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa 42891811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 2189748 - 2189806
Alignment:
Q  177 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataa 235  Q
    |||||||||||| | |||  ||||||||||||||||||||||||||||| | |||||||    
T  2189748 caagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaataa 2189806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 22512134 - 22512219
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    ||||||| ||||||| |||||||||||  |||| |  ||||||||| ||||||||||||| ||||||||| | ||| ||||||||||    
T  22512134 ttgcaagtgacaaacctatcaaaataagggtttccgaaatccaccagaattgagagaaaa-tctcgaataattttattgaataaaaa 22512219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 22520887 - 22520968
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaata 291  Q
    ||||||| ||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||||    
T  22520887 ttgcaagtgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaata 22520968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 37189867 - 37189778
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    ||||||||||||||| |||||||||||  |||   | ||||||||| ||||||||| |||  |||||||||||||||||||||||||| ||||    
T  37189867 ttgcaagcgacaaacctatcaaaataagggttccga-aatccaccagaaattgagaaaaa--tctcgaatattattaatgaataaaaaagtgt 37189778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 16598318 - 16598254
Alignment:
Q  171 ggttatcaagcgctaaacttagataaaaaagaa-caagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||| |||||||||||||||||| | |||||| |||||||||| ||||||||||| | ||||||    
T  16598318 ggttagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaacttgtgaaaata 16598254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 859244 - 859334
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtg 299  Q
    ||||||||||||||| |||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  859244 ttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaagtgtg 859334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 1217248 - 1217338
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtg 299  Q
    ||||||||||||||| |||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  1217248 ttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaagtgtg 1217338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 13882686 - 13882770
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  13882686 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 13882770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 13886159 - 13886243
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  13886159 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 13886243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 859155 - 859240
Alignment:
Q  149 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||| |||  |||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  859155 ttgacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 859240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 1217159 - 1217244
Alignment:
Q  149 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||| |||  |||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  1217159 ttgacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 1217244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 13886274 - 13886370
Alignment:
Q  207 gtttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||||| |||||||||||  |||| |||||||||||| ||||||||||||| ||||||||  | ||| ||||| |||| ||||||||    
T  13886274 gtttgcaagcgacaaacctatcaaaataagggtttccagaatccaccataattgagagaaaa-tctcgaatgattttattgaatcaaaaagtgtctct 13886370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 13882774 - 13882868
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| |||| |||| | ||| ||||| |||| ||||||||    
T  13882774 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcaaataattttattgaatcaaaaagtgtctct 13882868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 1220446 - 1220524
Alignment:
Q  156 agtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||| |||| |||||||| ||| |||||||| || ||| ||| |||||||||||||| |||||||||| | ||||||    
T  1220446 agtacagaagcgtagggttagcaaacgctaaacctacatagaaatgaacaagtttgcaaacgacaaacttgtgaaaata 1220524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 31577271 - 31577356
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    ||||||||||||||| ||||||| |||  |||| |  ||||||||| ||||||||||||||||| ||||||| ||| ||||| ||||    
T  31577271 ttgcaagcgacaaacctatcaaa-taagggtttccgaaatccaccagaattgagagaaaagtcttgaatatttttattgaatgaaaa 31577356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 1220528 - 1220603
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaata 291  Q
    ||||||||||||||| |||||||||| | ||||       |||||| |||||||||||||||||| |||||| ||||||||||    
T  1220528 ttgcaagcgacaaacctatcaaaatagaggttt-------ccaccagaattgagagaaaagtctctaatattgttaatgaata 1220603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 4888715 - 4888758
Alignment:
Q  180 gcgctaaacttagataaaaaagaacaagtttgcaagcgacaaac 223  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||    
T  4888715 gcgctgaacctagatagaaaagaacaagtttgcaagcgacaaac 4888758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 27309636 - 27309699
Alignment:
Q  172 gttatcaagcgctaaacttagataaaaaagaa-caagtttgcaagcgacaaacttatcaaaata 234  Q
    |||| |||||||||||| |||||  ||||||| |||||||||||||||||||||| | ||||||    
T  27309636 gttagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaata 27309699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 5678340 - 5678394
Alignment:
Q  250 caccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||| ||||||||||||||||||||||| | ||| ||||| |||| ||||||||    
T  5678340 caccagaattgagagaaaagtctcgaataattttattgaatgaaaaagtgtctct 5678394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 5703392 - 5703446
Alignment:
Q  250 caccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||| ||||||||||||||||||||||| | ||| ||||| |||| ||||||||    
T  5703392 caccagaattgagagaaaagtctcgaataattttattgaatgaaaaagtgtctct 5703446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 1786760 - 1786699
Alignment:
Q  163 aagcatagggttatcaagcgctaaacttagata-aaaaagaacaagtttgcaagcgacaaac 223  Q
    |||| |||| ||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||    
T  1786760 aagcgtaggattagcaagtgctaaacctagatagaaaaataacaagtttgcaagcgacaaac 1786699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 29175833 - 29175780
Alignment:
Q  163 aagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagc 216  Q
    |||| |||||||| |||||||||||| |||||  ||||||| ||||||||||||    
T  29175833 aagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagc 29175780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 3068963 - 3069053
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtg 299  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  3068963 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccaaaattgagagaaaagtatcgaatattattaatgaataaaagtgtg 3069053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 3063825 - 3063910
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaa 294  Q
    ||||||||||||||| |||||||||||  |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  3063825 ttgcaagcgacaaacctatcaaaataagggttttcggaatcaaccagaattgagagaaaagtctcgaatattattaatgaataaaa 3063910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 53013025 - 53012932
Alignment:
Q  211 gcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  53013025 gcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctct 53012932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 43306760 - 43306855
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||| |  ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  43306760 ttgcaagcgacaaacctatcaaaataagggtttccgtaatccaccagaattgagagaaaagtcttgaatattattaatgaataaaagtgtgcctct 43306855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 43304048 - 43304133
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaa 294  Q
    ||||||||||||||| ||| |||||||  |||| |  ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43304048 ttgcaagcgacaaacctattaaaataagggtttccgaaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaa 43304133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 5128998 - 5128914
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||| |||| |||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  5128998 tgacgcagtacagaagcgtagggttagcaggcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 5128914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 43303959 - 43304044
Alignment:
Q  149 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||||  |||| || ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  43303959 ttgacgcagtacggaagcgtaaggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 43304044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 43306672 - 43306756
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| | ||||||    
T  43306672 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcaacaaacttgtgaaaata 43306756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 41218769 - 41218710
Alignment:
Q  245 gaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  41218769 gaatccaccagaattgagagaaaagtctcgaatattattattgaataaaagtgtgtctct 41218710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 3063737 - 3063821
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||| ||||| |||||||| |||||| ||||| |||||| |||||||  |||||||||||||||||||| | ||||||    
T  3063737 tgacgcagtacgaaagcgtagggttagcaagcgttaaacctagatagaaaagaaagagtttgcaagcgacaaacttgtgaaaata 3063821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 4580563 - 4580493
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatatt 280  Q
    ||||||||||||||| ||||||| |||  ||||||||||||||| | ||||||||||||| |||||||||||    
T  4580563 ttgcaagcgacaaacctatcaaa-taagggttttcagaatccactagaattgagagaaaattctcgaatatt 4580493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 5128910 - 5128820
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||||    
T  5128910 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgt 5128820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 25857756 - 25857697
Alignment:
Q  246 aatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa-tgtgtctct 304  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  25857756 aatccaccacaattgagagaaaagtctcaaatattattattgaataaaaagtgtgtctct 25857697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 3068875 - 3068940
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaag 215  Q
    |||||||||||  |||| || ||||| |||||||||||| |||||| |||||||||||||||||||    
T  3068875 tgacgcagtacggaagcgtatggttagcaagcgctaaacctagatagaaaagaacaagtttgcaag 3068940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 40593531 - 40593598
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaata 278  Q
    ||||||||||||||| ||||||| |||  |||||| |||||||||||||||||||||||| |||||||||    
T  40593531 ttgcaagcgacaaacctatcaaa-taagggttttcggaatccaccaaaattgagagaaaa-tctcgaata 40593598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 45168338 - 45168465
Alignment:
Q  169 agggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttat-caaaataaatgttttcagaatccacca-aaattgagagaa 266  Q
    ||||||| |||| ||||||| |||||  |||  |||||||||||||||||||||||| |  |||||| | | || |||||||||| | ||||||||||||    
T  45168338 agggttagcaagtgctaaacctagattgaaataaacaagtttgcaagcgacaaacttgtgaaaaatatagggttccagaatccacaagaaattgagagaa 45168437  T
Q  267 aagtctcgaatattattaatgaataaaaa 295  Q
    || ||||||||| | ||| ||||||||||    
T  45168438 aa-tctcgaataattttattgaataaaaa 45168465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 19950003 - 19949933
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatatt 280  Q
    ||||||||||||||||||||||| |||  |||||  ||||||| || |||||||||||||||||| ||||||    
T  19950003 ttgcaagcgacaaacttatcaaa-taagggtttttggaatccatcagaattgagagaaaagtctctaatatt 19949933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 39913352 - 39913412
Alignment:
Q  245 gaatccaccaaaattgagagaaaagtctcgaatattattaatgaat-aaaaatgtgtctct 304  Q
    |||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||||||| ||||    
T  39913352 gaatccaccagaattgggagaaaagtctcgaatatttttattgaatcaaaaatgtgcctct 39913412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 20398488 - 20398558
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatatt 280  Q
    |||||||||||||   ||||||| |||  |||||| |||||||||| |||||||| ||||||||||||||||    
T  20398488 ttgcaagcgacaagtctatcaaa-taagggttttcggaatccaccagaattgagaaaaaagtctcgaatatt 20398558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 52708913 - 52708858
Alignment:
Q  171 ggttatcaagcgctaaacttagata-aaaaagaacaagtttgcaagcgacaaactt 225  Q
    ||||| |||||||||||| |||||| ||||||||||| ||||||||||| ||||||    
T  52708913 ggttaacaagcgctaaacctagatagaaaaagaacaaatttgcaagcgataaactt 52708858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 29340897 - 29340980
Alignment:
Q  212 caagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    |||||||||||| |||||||||||| |||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  29340897 caagcgacaaacctatcaaaataaaggtttccggaatccactagaattgagagaaaagtctcgaatattattaatgaataaaaa 29340980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 3536123 - 3536039
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  3536123 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 3536039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 3542334 - 3542250
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| | ||||||    
T  3542334 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgtaagcgacaaacttgtgaaaata 3542250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 3536035 - 3535941
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||  | |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  3536035 ttgcaagcgacaaacctatcaaaataagggttc-cggaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaagtgtgcctct 3535941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 3542246 - 3542152
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||  | |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  3542246 ttgcaagcgacaaacctatcaaaataagggttc-cggaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaagtgtgcctct 3542152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 30050005 - 30049921
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||  ||||  ||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||    
T  30050005 tgacgcagtacggaagcgaagggttagcaagcgctaaacctatatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 30049921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 30052273 - 30052208
Alignment:
Q  169 agggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  30052273 agggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 30052208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 29340810 - 29340890
Alignment:
Q  154 gcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||  |||| |||||||| || ||||||||| |||||| |||| |||||||||||||||||||||||| | ||||||    
T  29340810 gcagtacggaagcgtagggttagcaggcgctaaacctagatagaaaaaaacaagtttgcaagcgacaaacttgtgaaaata 29340890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 30049917 - 30049827
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaa-ttgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    ||||||||||||||| ||||||||| |  |||  | ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  30049917 ttgcaagcgacaaacctatcaaaattagggttc-cggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgt 30049827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 30052204 - 30052114
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaa-ttgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    ||||||||||||||| ||||||||| |  |||  | ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  30052204 ttgcaagcgacaaacctatcaaaattagggttc-cggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgt 30052114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 3565733 - 3565652
Alignment:
Q  213 aagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    |||||| |||| ||||||| |||  |||| || ||||||||| ||||||||||||||||||||||||| ||| ||||| ||||    
T  3565733 aagcgataaacctatcaaa-taagagtttccaaaatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaa 3565652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 33615530 - 33615588
Alignment:
Q  177 caagcgctaaacttagata-aaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||||| | ||||||    
T  33615530 caagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 33615588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 19232286 - 19232241
Alignment:
Q  248 tccaccaaaattgagagaaaagtctcgaatattattaatgaataaa 293  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||    
T  19232286 tccaccaaaattgagataaaagtctcgaatattgttattgaataaa 19232241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 29342116 - 29342061
Alignment:
Q  147 tattgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaaga 202  Q
    ||||||||||||||  |||| |||||||| |||||||||||| |||||| ||||||    
T  29342116 tattgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaaga 29342061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 11190498 - 11190408
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtct 302  Q
    ||||||||||||||| |||||||   || |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||||||    
T  11190498 ttgcaagcgacaaacctatcaaat--aaggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtct 11190408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 1127315 - 1127271
Alignment:
Q  179 agcgctaaacttagataaaaaagaa-caagtttgcaagcgacaaa 222  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||    
T  1127315 agcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaa 1127271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 22716659 - 22716564
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||| ||  |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  22716659 ttgcaagcgacaaacctatcaaaaaaagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctct 22716564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 13085180 - 13085274
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||||| |||||||||||||||||||||||| ||||||||| | ||| |||||||||| ||||||||    
T  13085180 ttgcaagcgacaaacctatcaaaataagggttttcggaatccaccaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctct 13085274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 22691312 - 22691217
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||| ||||||  |||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  22691312 ttgcaagcgacaaacctatcgaaataagggtttccggaatccaccagaattgagagaaaagtcttgaatattattaatgaataaaagtgtgcctct 22691217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 22988558 - 22988653
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||| ||| ||  |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  22988558 ttgcaagcgacaaacctatcgaaaaaagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctct 22988653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 6659351 - 6659414
Alignment:
Q  171 ggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||| |||||||||||  |||||| ||||||||||||||||||||||||||||| | ||||||    
T  6659351 ggttagcaagcgctaaatctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 6659414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 6659418 - 6659503
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| ||||    
T  6659418 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaatagttttagtgaatcaaaa 6659503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 13086227 - 13086308
Alignment:
Q  213 aagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    ||||||||||| |||||||||||  ||||||||||||||  | ||||||||||||| ||||||||| | ||| ||||| ||||    
T  13086227 aagcgacaaacctatcaaaataagagttttcagaatccattagaattgagagaaaa-tctcgaataattttattgaattaaaa 13086308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 19935577 - 19935492
Alignment:
Q  148 attgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    |||||||||||||| |||| |||| | | | ||||||||||| ||||| |||| || || |||||||||||||||||||| ||||||    
T  19935577 attgacgcagtacagaagcgtaggct-agccagcgctaaactcagatagaaaaaaataaatttgcaagcgacaaacttatgaaaata 19935492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 4053111 - 4053062
Alignment:
Q  246 aatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||| ||||    
T  4053111 aatccaccataattgagagaaaagtctcgaatatttttattgaatgaaaa 4053062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 7723665 - 7723746
Alignment:
Q  151 gacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||| |||| |||| | | ||||||||||||| ||||  |||||||||||||||||||| |||||||| | ||||||    
T  7723665 gacgcagtacagaagcgtaggct-agcaagcgctaaact-agattgaaaagaacaagtttgcaagctacaaacttgtgaaaata 7723746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 9596942 - 9596857
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    |||||| ||| |||| ||||||| |||  |||| || ||||||||| |||||||||||||||||| |||||| ||| ||||| ||||    
T  9596942 ttgcaaacgataaacctatcaaa-taagggtttccataatccaccagaattgagagaaaagtctcaaatattcttattgaatgaaaa 9596857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 21433594 - 21433647
Alignment:
Q  182 gctaaacttagata-aaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||| |||||| ||||||||||| || ||||||||||||||||| ||||||    
T  21433594 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaata 21433647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 24667637 - 24667609
Alignment:
Q  261 agagaaaagtctcgaatattattaatgaa 289  Q
    |||||||||||||||||||||||||||||    
T  24667637 agagaaaagtctcgaatattattaatgaa 24667609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 34949126 - 34949162
Alignment:
Q  258 ttgagagaaaagtctcgaatattattaatgaataaaa 294  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  34949126 ttgagagaaaagtctcgaatatttttattgaataaaa 34949162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 13444076 - 13444171
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    ||||||||||||||| |||||||||||  |||| |  ||||||||| |||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  13444076 ttgcaagcgacaaacatatcaaaataagggtttccgtaatccaccagaattgagagaaaagtctctaatattattactgaataaaaatgtgcctct 13444171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 13443988 - 13444072
Alignment:
Q  150 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||| |  ||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  13443988 tgacgcagttcggaagcatagggttaacaagcactaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 13444072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 50857443 - 50857528
Alignment:
Q  149 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||||  |||| |||||||| |||||||||||| |||||| ||||||| ||||||| ||||||||||||| | ||||||    
T  50857443 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgtaagcgacaaacttgtgaaaata 50857528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 13441687 - 13441782
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctct 304  Q
    |||||||||| |||| ||| |||||||   ||| | ||||||| || |||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  13441687 ttgcaagcgaaaaacctattaaaataaggatttccggaatccatcagaattgagagaaaagtctctaatattattaatgaataaaagtgtgcctct 13441782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 8931310 - 8931225
Alignment:
Q  149 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||||  |||| |||||||| |||||||||||| |||||  |||| ||||||||||||||||| |||||| | ||||||    
T  8931310 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagattgaaaaaaacaagtttgcaagcgataaacttgtgaaaata 8931225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 50857532 - 50857600
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaata 278  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| |||||||||    
T  50857532 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaata 50857600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 8931221 - 8931121
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatga-ataaaaatgtgtctctgc 306  Q
    ||||||||||||||| |||||| ||||  |||  | |||||||||| |||||||||||||| ||||||||||||||||||| | |||| |||||||| ||    
T  8931221 ttgcaagcgacaaacctatcaatataagggttc-cggaatccaccagaaattgagagaaaa-tctcgaatattattaatgataaaaaagtgtgtctcggc 8931124  T
Q  307 tgc 309  Q
    |||    
T  8931123 tgc 8931121  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 12033639 - 12033724
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 295  Q
    ||||||||||||||||||||||| | |  |||| || ||||||  | ||||||||||||||||||||||||| ||| | ||||||||    
T  12033639 ttgcaagcgacaaacttatcaaa-tgagggtttacataatccattagaattgagagaaaagtctcgaatatttttattaaataaaaa 12033724  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 13441627 - 13441673
Alignment:
Q  171 ggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcg 217  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  13441627 ggttagcaagcgctaaacttagatagaaaagaacaattttgcaagcg 13441673  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 40804660 - 40804591
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatat 279  Q
    ||||||||||||||| ||||||| ||   |||| || ||||||||| ||||||||||||||||||||||||    
T  40804660 ttgcaagcgacaaacctatcaaa-tacgggtttccaaaatccaccagaattgagagaaaagtctcgaatat 40804591  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 10927235 - 10927206
Alignment:
Q  196 aaaaagaacaagtttgcaagcgacaaactt 225  Q
    ||||||||||||||||||||||||||||||    
T  10927235 aaaaagaacaagtttgcaagcgacaaactt 10927206  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 12486314 - 12486381
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaata 278  Q
    |||||||| |||||| ||| ||| |||  |||||| |||||||||||||||||||||||| |||||||||    
T  12486314 ttgcaagcaacaaacctattaaa-taagggttttcggaatccaccaaaattgagagaaaa-tctcgaata 12486381  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 8965803 - 8965831
Alignment:
Q  199 aagaacaagtttgcaagcgacaaacttat 227  Q
    |||||||||||||||||||||||||||||    
T  8965803 aagaacaagtttgcaagcgacaaacttat 8965831  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 43681525 - 43681478
Alignment:
Q  177 caagcgctaaacttagat--aaaaaagaacaagtttgcaagcgacaaa 222  Q
    |||||||||||| |||||  |||||| |||||||||||||||||||||    
T  43681525 caagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaa 43681478  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 40778785 - 40778870
Alignment:
Q  149 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||||  ||||  ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  40778785 ttgacgcagtacggaagcgcagggttaacaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtaaaaata 40778870  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 21848966 - 21849049
Alignment:
Q  151 gacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||  |||| |||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  21848966 gacgcagtacggaagcgtagggttagcaagcgccaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 21849049  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 19677219 - 19677289
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatatt 280  Q
    ||||||||||||||| | ||||| |||  |||||| |||||||||| |||||||||||||||||||||||||    
T  19677219 ttgcaagcgacaaacctttcaaa-taagggttttcggaatccaccagaattgagagaaaagtctcgaatatt 19677289  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 40778874 - 40778964
Alignment:
Q  209 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 300  Q
    ||||||||||||||| |||||||||||  ||||   |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||||    
T  40778874 ttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgt 40778964  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 19497349 - 19497388
Alignment:
Q  195 aaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  19497349 aaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 19497388  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 22440920 - 22440870
Alignment:
Q  177 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttat 227  Q
    |||| ||||||| |||||| ||||||||| ||| |||||||||||||||||    
T  22440920 caagtgctaaacctagatagaaaagaacatgttcgcaagcgacaaacttat 22440870  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 492630 - 492581
Alignment:
Q  177 caagcgctaaacttagataaaaaagaa-caagtttgcaagcgacaaactt 225  Q
    ||||||||||| ||||||  ||||||| ||||||||||||||||||||||    
T  492630 caagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaactt 492581  T

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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 37772 - 37716
Alignment:
Q  178 aagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||    
T  37772 aagcgctaaacctagattgaaaagaacaagtttgcaagcgacaaacttatgaaaata 37716  T

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Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 49362 - 49327
Alignment:
Q  199 aagaacaagtttgcaagcgacaaacttatcaaaata 234  Q
    ||||||||||||||||||||||||||||| ||||||    
T  49362 aagaacaagtttgcaagcgacaaacttatgaaaata 49327  T

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Target: scaffold0240 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 16109 - 16063
Alignment:
Q  177 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaac 223  Q
    |||| ||||||| |||||| ||||||||||||||||||| |||||||    
T  16109 caagtgctaaacctagatagaaaagaacaagtttgcaagtgacaaac 16063  T

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