View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0073_low_1 (Length: 451)
Name: NF0073_low_1
Description: NF0073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0073_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 44691785 - 44691502
Alignment:
| Q |
30 |
aaagtatatccaagtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacat |
129 |
Q |
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| T |
44691785 |
aaagtatatccatgtgattgataagcatggaatggcatgaagatttggtataattgaagttttagaaagtaacaaaccagcctttgtcttggtctcacat |
44691686 |
T |
|
| Q |
130 |
ttgatatccaattgttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaa |
229 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44691685 |
ttgatatccaattgttgaacccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggatgaagcaccttttcaa |
44691586 |
T |
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| Q |
230 |
atttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgc |
313 |
Q |
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| T |
44691585 |
atttcccaaaaccttctttcatagccacttgagattgatcaacttgcacgcaacacacaatattccccattttcttttcactgc |
44691502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 46 - 411
Target Start/End: Complemental strand, 44682091 - 44681727
Alignment:
| Q |
46 |
attgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgtt |
145 |
Q |
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| T |
44682091 |
attgataagcatggaatgacatgaagatttggtttaattgatgtttgagacagtaacaaac----ctttgtctttgtctcacacttgatatccaattgtt |
44681996 |
T |
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| Q |
146 |
gtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttc |
245 |
Q |
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| T |
44681995 |
gtacccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaaaccttc |
44681896 |
T |
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| Q |
246 |
tttcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgcaatgtttcaaaacattatcaacaca----gaa |
341 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || |||| | ||||| |||| || |
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| T |
44681895 |
tttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcactgcaatgcttgaaaata-tatcagcacatcatcaa |
44681797 |
T |
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| Q |
342 |
taaaaattgcaaagtatgaggatgataattttatcatgcaagaaattcaaatcatttcatataaacactt |
411 |
Q |
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|| | | | |||| ||||||||||| |||| ||||||||||||| ||||||||||| | |||||||||| |
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| T |
44681796 |
tacagaatacaaattatgaggatgagaattgtatcatgcaagaatttcaaatcattccgaataaacactt |
44681727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 46 - 325
Target Start/End: Complemental strand, 44653077 - 44652802
Alignment:
| Q |
46 |
attgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgtt |
145 |
Q |
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|||| |||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44653077 |
attggtaagcatggaatgacatgaacacttggtttaattgatgtttgagaccgtaac----gaacctttgtcttggtctcacatttgatatccaattgtt |
44652982 |
T |
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| Q |
146 |
gtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttc |
245 |
Q |
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||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44652981 |
gtacccgaagagagagatgaccagcaattctttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaaaccttc |
44652882 |
T |
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| Q |
246 |
tttcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgcaatgtttcaaaa |
325 |
Q |
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| T |
44652881 |
tttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcactgcaatgcttcaaaa |
44652802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 48 - 325
Target Start/End: Original strand, 44637251 - 44637528
Alignment:
| Q |
48 |
tgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgt |
147 |
Q |
| |
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|||||| ||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
44637251 |
tgataatcatggaatgacgtgaagatttcgttaaattgaagttttagacagtaacaaacgaacctttgtcttggtctcacattttatatccaattgctgt |
44637350 |
T |
|
| Q |
148 |
agccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctt |
247 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| |
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| T |
44637351 |
agccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccctctt |
44637450 |
T |
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| Q |
248 |
tcatagccacttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgcaatgtttcaaaa |
325 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| |
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| T |
44637451 |
tcatagccactgtagattgatcaacttgcacacaacacaaaagattccccattttcttttaactgcaacatttcaaaa |
44637528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 58 - 320
Target Start/End: Complemental strand, 44631578 - 44631319
Alignment:
| Q |
58 |
ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgtagccgaagag |
157 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
44631578 |
ggaatgacatgaagatttggttgaattaaagtttgagacagtaacaaa---acctttgtcttggtctcacattttatatccaattgttgtagccgaaggg |
44631482 |
T |
|
| Q |
158 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctttcatagccac |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
44631481 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagccac |
44631382 |
T |
|
| Q |
258 |
ttgagattgatcaacttgcacgcaacacataagattccccattttcttttcactgcaatgttt |
320 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |
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| T |
44631381 |
cgtagactgatcaacttgcacgcaacacaaaagattccccatttgcttttaactgcaatgttt |
44631319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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