View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0073_low_3 (Length: 341)
Name: NF0073_low_3
Description: NF0073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0073_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 33465166 - 33465404
Alignment:
| Q |
12 |
atagggaaaaagttatggattatgaagcaaaagagaaattaagaatgttgagaagaatgaaagatggaagtgtaagaagtagagactcttcttgttcttg |
111 |
Q |
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| T |
33465166 |
atagggaaaaagttatggattatgaagcaaaagagaaattaagaatgttgagaagaatgaaagatggaagtgtaagaagtagagactcttcttgttcttg |
33465265 |
T |
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| Q |
112 |
ttgcaacaccggctacaccgatgaactgtcagttgatcttaacaatgaagaaaaagaacagtataacaatgcaaatgatgatacagtttctaacttggag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33465266 |
ttgcaacaccggctacaccgatgaactgtcagttgatcttaacaatgaagaaaaagaacagtataacaatgcaaatgatgatacagtttctaacttggag |
33465365 |
T |
|
| Q |
212 |
gagatagcattagattgtgt-aaacatgtaagtgaactt |
249 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
33465366 |
gagatagcattagattgtgtaaaacatgtaagtgaactt |
33465404 |
T |
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