View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0074_high_5 (Length: 234)

Name: NF0074_high_5
Description: NF0074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0074_high_5
NF0074_high_5
[»] chr4 (11 HSPs)
chr4 (1-229)||(3950848-3951074)
chr4 (32-229)||(4027801-4027999)
chr4 (1-104)||(4215919-4216022)
chr4 (1-92)||(3796807-3796898)
chr4 (157-216)||(4013594-4013653)
chr4 (1-84)||(4014324-4014407)
chr4 (155-229)||(4005335-4005409)
chr4 (24-84)||(3961099-3961159)
chr4 (155-222)||(3991281-3991348)
chr4 (35-84)||(4221238-4221287)
chr4 (35-86)||(3822703-3822754)
[»] chr5 (1 HSPs)
chr5 (155-220)||(13400526-13400591)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3950848 - 3951074
Alignment:
Q  1 aggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttcttattgctatgacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3950848 aggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaaacattgaaggtcagaaattgctttcttattgctatgacc 3950947  T
Q  101 attaatttaatttcttgtgatattttcttttcannnnnnnctgtttcgttccgttaataatcttgtgtttcccttattgtgacgttcaaggttctagaga 200  Q
     |||||||||||| |||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3950948 gttaatttaattttttgtgatattttcttttcatttttttctgtttcgttccgttaataaccttgtgtttcccttattgtgacgttcaaggttctagaga 3951047  T
Q  201 caaagaaagattgttcatagtgcacttgt 229  Q
    |  ||||||||||||| ||||||||||||    
T  3951048 c--agaaagattgttcgtagtgcacttgt 3951074  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 4027999 - 4027801
Alignment:
Q  32 gaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttcttattgctatgaccattaatttaatttcttgtgatattttctttt 131  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||   |||||| ||||||||||   ||  |||||| ||||| |||    
T  4027999 gaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttcttcaggctatggccattaattttgctttctgtgatcttttcattt 4027900  T
Q  132 ca-nnnnnnnctgtttcgttccgttaataatcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgt 229  Q
    ||        || |||||||||| ||||| |||||||||||||||||||| |  ||| |||| |||||||| ||||||||| ||||| |||||| ||||    
T  4027899 catttcttttctctttcgttccggtaatattcttgtgtttcccttattgtaattttcgaggtcctagagacgaagaaagatcgttcagagtgcatttgt 4027801  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 4216022 - 4215919
Alignment:
Q  1 aggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttcttattgctatgacc 100  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||||||| ||||||||||||||| || |  || |||||||||| ||||| |||    
T  4216022 aggtcaatgacattgcttcttccatatgatagaaagttgaatcagatctctagcggccaaagcattgaagttccgttatagctttcttatggctatcacc 4215923  T
Q  101 atta 104  Q
    ||||    
T  4215922 atta 4215919  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3796898 - 3796807
Alignment:
Q  1 aggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttcttattg 92  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||| ||||| ||||||||||||||| || |  || ||||||||||||    
T  3796898 aggtcaatgacattgcttcttccatatgatagaaagttgaatcagatcactagcggccaaagcattgaagttccgttatagctttcttattg 3796807  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 4013653 - 4013594
Alignment:
Q  157 ataatcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttc 216  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  4013653 ataatcttgtgtttcccttattgtgatgttcaaggttctagagacgaagaaagattgttc 4013594  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4014407 - 4014324
Alignment:
Q  1 aggtcaatgacattgcttcttcaatatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt 84  Q
    |||||||||||||| ||||||  ||||| |||||| ||||||||||||| ||||||| ||||||||||||||  ||||||||||    
T  4014407 aggtcaatgacattacttctttcatatgagagaaacttgaatcagatctatagcagctaaagcattgaaggtttgaaattgctt 4014324  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 4005409 - 4005335
Alignment:
Q  155 taataatcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtgcacttgt 229  Q
    |||||| |||||||||||||||||| |   ||||||||||||||||| ||||||||||||||| |||||||||||    
T  4005409 taataaccttgtgtttcccttattgcgttattcaaggttctagagacgaagaaagattgttcagagtgcacttgt 4005335  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 3961099 - 3961159
Alignment:
Q  24 atatgggagaaagttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt 84  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||||||| || ||||||||    
T  3961099 atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt 3961159  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 3991348 - 3991281
Alignment:
Q  155 taataatcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatagtg 222  Q
    |||||| ||||||||||||||||||  |  |||||||||||| |||| ||||||||||||||| ||||    
T  3991348 taataaccttgtgtttcccttattgatatattcaaggttctacagacgaagaaagattgttcagagtg 3991281  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 4221287 - 4221238
Alignment:
Q  35 agttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctt 84  Q
    |||||||||||||||||||||  ||||||||| |||||||| ||||||||    
T  4221287 agttgaatcagatctctagcaaacaaagcatttaaggtcagtaattgctt 4221238  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 3822754 - 3822703
Alignment:
Q  35 agttgaatcagatctctagcagccaaagcattgaaggtcagaaattgctttc 86  Q
    |||||||||||||||||||||  ||||||||| |||||||| |||| |||||    
T  3822754 agttgaatcagatctctagcaaacaaagcatttaaggtcagtaatttctttc 3822703  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 13400591 - 13400526
Alignment:
Q  155 taataatcttgtgtttcccttattgtgacgttcaaggttctagagacaaagaaagattgttcatag 220  Q
    |||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  13400591 taataaccttgtgtttcccttattgcgatgttcaaggttcttgagacaaagaaagattgttcatag 13400526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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