View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0074_low_1 (Length: 404)
Name: NF0074_low_1
Description: NF0074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0074_low_1 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 54632056 - 54632201
Alignment:
| Q |
94 |
gtccttctactacttaattgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgt |
193 |
Q |
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| T |
54632056 |
gtccttctactacttaattgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgt |
54632155 |
T |
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| Q |
194 |
aactgtggttcagaacttaacctgttatgttaacaatctccttgct |
239 |
Q |
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| T |
54632156 |
aactgtggttcagaacttaacctgttatgttaacaatctccttgct |
54632201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 258 - 399
Target Start/End: Original strand, 54632233 - 54632374
Alignment:
| Q |
258 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
357 |
Q |
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| T |
54632233 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
54632332 |
T |
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| Q |
358 |
agcacttaaatatttcttttgttttcaaacttctctgctgct |
399 |
Q |
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| T |
54632333 |
agcacttaaatatttcttttgttttcaaacttttctgctgct |
54632374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 52125432 - 52125333
Alignment:
| Q |
112 |
tgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgta-actgtggttcagaact |
210 |
Q |
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| T |
52125432 |
tgtattttgatgttaacggatgatgatattttatggtaggattcta-attctatcatgttttgaatgttatctatcactagtagaatgtggtttagaact |
52125334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 258 - 399
Target Start/End: Complemental strand, 45313418 - 45313283
Alignment:
| Q |
258 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
357 |
Q |
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| T |
45313418 |
tctatcatgtctaacttagatattccttctttgtttatcttctaatt------ttatgtttatcacgtctaataatggcattagagtaaatcatccttaa |
45313325 |
T |
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| Q |
358 |
agcacttaaatatttcttttgttttcaaacttctctgctgct |
399 |
Q |
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| T |
45313324 |
agcacttaaatatttcttttgttttcaaacttttctgctgct |
45313283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 45313595 - 45313481
Alignment:
| Q |
116 |
ttttgatattaacctatgatgatat------tttatggtaggattat----agtttctatcatcttttgaatgttgactatcacttgtaactgtggttca |
205 |
Q |
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| T |
45313595 |
ttttgatattaacctatgatgatatgatatttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcacttttaactgtgcttca |
45313496 |
T |
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| Q |
206 |
gaacttaacctgtta |
220 |
Q |
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| T |
45313495 |
gaacttaacttgtta |
45313481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 45310405 - 45310338
Alignment:
| Q |
307 |
aatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaaagcacttaaatatttctt |
375 |
Q |
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| T |
45310405 |
aatgttatgtttatcacgtgtaataatggcaataaagtaaatcagcc-taaagcactaaattatttctt |
45310338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 18189720 - 18189767
Alignment:
| Q |
164 |
atcatcttttgaatgttgactatcacttgtaactgtggttcagaactt |
211 |
Q |
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| T |
18189720 |
atcatgttttgaatgttggctaacatttgtaactgtggttcagaactt |
18189767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 8226 - 8267
Alignment:
| Q |
170 |
ttttgaatgttgactatcacttgtaactgtggttcagaactt |
211 |
Q |
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| T |
8226 |
ttttgaatgttgtctaacatttgtaactgtggttcagaactt |
8267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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