View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0074_low_2 (Length: 345)

Name: NF0074_low_2
Description: NF0074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0074_low_2
NF0074_low_2
[»] chr8 (6 HSPs)
chr8 (93-345)||(18670794-18671058)
chr8 (93-338)||(13113571-13113828)
chr8 (11-94)||(13113971-13114054)
chr8 (169-345)||(13102722-13102898)
chr8 (169-338)||(13095399-13095568)
chr8 (11-92)||(13102999-13103080)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 93 - 345
Target Start/End: Original strand, 18670794 - 18671058
Alignment:
Q  93 atgtgactgtaatctaaatatttccatgttaaaatgcacctataaacaacattatatgttagatttt------------gtgtcttgttatgatactatt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            |||||||||||||||||||||    
T  18670794 atgtgactgtaatctaaatatttccatgttaaaatgcacctataaacaacattacatgttagattttgatgatatttttgtgtcttgttatgatactatt 18670893  T
Q  181 tttcaaggatggaagaactgctgatgcgccggatgttcttcccgatggacacaaagtggaaaagggcgatggagtgtactacttggcctatgcgaggggg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||     
T  18670894 tttcaaggatggaagaactgctgatgcgccggatgttcttcccgatggacacaaagtggaaaagggcgatggagtgtactacttggcctatgctatgggt 18670993  T
Q  281 cgaatggcgtccattnnnnnnnatgacgccgatgaattttggcctgaaagatggattaacaacgg 345  Q
    |||||| | |||||        | |||| |||||||||||| |||||||||||||||||||||||    
T  18670994 cgaatgtcttccatctggggggaagacgtcgatgaattttgtcctgaaagatggattaacaacgg 18671058  T

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Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 93 - 338
Target Start/End: Complemental strand, 13113828 - 13113571
Alignment:
Q  93 atgtgactgtaatctaaatatttccatgttaaaatgcacctataaacaacattatatgttagattttg------------tgtcttgttatgatactatt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||            ||||||||||||||||||||    
T  13113828 atgtgactgtaatctaaatatttccatgttaaaatgcacctataaacaacattacatgttagattttgatgatatttttgtgtcttgttatgatactatt 13113729  T
Q  181 tttcaaggatggaagaactgctgatgcgccggatgttcttcccgatggacacaaagtggaaaagggcgatggagtgtactacttggcctatgcgaggggg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| | |||     
T  13113728 tttcaaggatggaagaactgctgatgcgccggatgttcttcccgatggacacaaactggaaaagggcgatggagtgtattacttggcctatgctatgggt 13113629  T
Q  281 cgaatggcgtccattnnnnnnnatgacgccgatgaattttggcctgaaagatggatta 338  Q
    |||||| | ||||||       | ||||||||||||||| | ||||||||||||||||    
T  13113628 cgaatgtcttccatttggggggaagacgccgatgaatttcgtcctgaaagatggatta 13113571  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 13114054 - 13113971
Alignment:
Q  11 cagagacattgagattgtaccctgtactccctatcgtatgtaccttctaccaatttcttcgaaaccatcttgaattatttttat 94  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13114054 cagagacattgagattgtaccctgtactccctgttgtatgtaccttctaccaatttcttcaaaaccatcttgaattatttttat 13113971  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 345
Target Start/End: Complemental strand, 13102898 - 13102722
Alignment:
Q  169 tatgatactatttttcaaggatggaagaactgctgatgcgccggatgttcttcccgatggacacaaagtggaaaagggcgatggagtgtactacttggcc 268  Q
    |||||||  |||||||||||||||||||||||| ||||| || ||| ||||||| |||||||||||| |||||||||| || |||||| |||||||||||    
T  13102898 tatgatatcatttttcaaggatggaagaactgcagatgcacctgatattcttcctgatggacacaaactggaaaagggagacggagtgaactacttggcc 13102799  T
Q  269 tatgcgagggggcgaatggcgtccattnnnnnnnatgacgccgatgaattttggcctgaaagatggattaacaacgg 345  Q
    ||||| | ||| |||||| | |||||        | |||||| |||||||| | || ||||||||||||||||||||    
T  13102798 tatgctatgggtcgaatgtcttccatatggggggaagacgccaatgaatttcgtccagaaagatggattaacaacgg 13102722  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 338
Target Start/End: Complemental strand, 13095568 - 13095399
Alignment:
Q  169 tatgatactatttttcaaggatggaagaactgctgatgcgccggatgttcttcccgatggacacaaagtggaaaagggcgatggagtgtactacttggcc 268  Q
    ||||||||||||||||||||||||||||||||| ||||| || ||| ||||||| ||||| |||||| || ||||||| || | |||| ||||| |||||    
T  13095568 tatgatactatttttcaaggatggaagaactgcggatgcacctgatattcttcctgatggccacaaactgcaaaagggagacgcagtgaactacatggcc 13095469  T
Q  269 tatgcgagggggcgaatggcgtccattnnnnnnnatgacgccgatgaattttggcctgaaagatggatta 338  Q
    ||||| | ||| |||||| | ||||||       | |||||||| |||||| | ||||||||||||||||    
T  13095468 tatgctatgggtcgaatgtcttccatttggggggaagacgccgaagaatttcgtcctgaaagatggatta 13095399  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 13103080 - 13102999
Alignment:
Q  11 cagagacattgagattgtaccctgtactccctatcgtatgtaccttctaccaatttcttcgaaaccatcttgaattattttt 92  Q
    ||||||||||||||||||| |||||  | ||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  13103080 cagagacattgagattgtatcctgttgttcctattgtatgtaccttctaccaatttcttcgaaaccatcttaagttattttt 13102999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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